SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54639

Length: 947 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene54639 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15936	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	NAC protein 1 n=2 Tax=Elaeis guineensis RepID=Q2XQF5_ELAGV	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nac protein 1	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 102 aas, your sequence is shorter than subject: 273 - 387

Fln protein: MGRQDAEAQLNLPPGFRFFPTDDELVVHYLCKKAASLPIAVPIIAEVDLYKFDPWELPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGSNRRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQEWSSEAAMEPSHEEIDQKVPGILPTGNTIMNSNVEHSERISQDSTKSAPSPNCRTISNHDSRTSAITSMSYNSNFEQNLNISNASSAPMELPGLAP*

Protein Length: 274

Fln nts: TGTATCGACCTTGGCTGTCACTCATTTTTCGGAAGGAATTGGCGTCGTGACCTTGGCTGTCACTCAAGTCAAAGGTGTAATCAAGATCAGTCTTTACAAC_-_ATGGGGAGACAGGATGCAGAGGCCCAGCTGAATTTACCGCCCGGATTCAGATTCTTCCCTACAGATGACGAGCTGGTAGTGCATTACTTGTGCAAGAAGGCTGCCTCACTGCCCATTGCTGTTCCTATTATTGCAGAGGTGGACTTGTACAAATTTGATCCATGGGAGCTGCCAGAAAAGGCACTGTTTGGAGAAAAGGAGTGGTATTTCTTCACTCCCAGGGACAGGAAGTATCCAAATGGTTCTCGCCCCAACAGGGCTGCTGGCTCAGGATACTGGAAAGCCACAGGTGCAGATAAACCCATCACTGCTAAGGGCAGCAACAGGCGTGTTGGCATCAAGAAGGCTCTGGTTTTCTATGTCGGAAAAGCACCTAAAGGAAACAAGACTAATTGGATTATGCATGAATACCGCCTTGCTGATGTCAATAGATCTGCAAAGAAGAAGGGCAGCTTAAGGTTGGATGATTGGGTACTTTGTCGAATATACAACAAGAAGAGCAGTGCCGAGAAGTTAGCTAAGGAGCAAGAGTGGTCCTCAGAAGCAGCAATGGAACCATCCCACGAAGAAATTGATCAAAAGGTGCCAGGAATACTGCCCACTGGGAATACTATAATGAACTCGAACGTTGAGCATTCAGAAAGAATTTCACAAGATTCGACCAAATCTGCCCCCTCTCCGAATTGCAGAACAATCTCTAACCATGATTCAAGAACTTCTGCCATTACTTCCATGAGCTACAACTCAAACTTTGAGCAGAATTTGAACATTTCAAATGCCAGTAGTGCTCCAATGGAGCTTCCAGGACTTGCCCCATAACCAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c86766___MGRQDAEAQLNLPPGFRFFPTDDELVVHYLCKKAASLPIAVPIIAEVDLYKFDPWELPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGSNRRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQ-EWSSEAAMEPSHEEIDQKVPGILPTGNTIMNSNVEHSERISQDSTKSAPSPNCRTISNHDSRTSAITSMSYNSN--FEQNLNISNASSAPMELPGLAP
A9NZG8________________MGRPNAEAQLNLPPGFRFFPTDDELVVHYLCRKAASQAIAVPIIAEVDLYKFDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGSNKRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQKEWSSEEAMEQFHEEIDEKVPGILPTGNTIMNSSIEHSERTSQDSTISAPSPNCRTASNHDSRASAITSLSYNSNPIFEQNLNLSNARSAPMEIPELVP

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
313		10	90		0.90298
393		88	11		0.923564
394		11		88	0.923564
396	88		11		0.923564
402	11	88			0.923565
404	11	88			0.923567
405			11	88	0.923564
406		11		88	0.923564
408	11			77	0.968132
409	11			88	0.923564
410		88	11		0.923564
411			11	88	0.923564
413		11		88	0.923564
414	11		88		0.923564
421			11	88	0.923564
436		87	12		0.992554
438	87	12			0.992554
439	12		87		0.992554
442		12	87		0.992554
443	12		87		0.992554
444	12			87	0.992554
445	87		12		0.992554
446			12	87	0.992554
450		12		87	0.992554
454	87		12		0.992554
491		75	25		0.996474
492	25	75			0.996475
494	75			25	0.996474
495		75	25		0.996476
497		25		75	0.996478
506		66		33	0.997461
911	66	33			0.997476
912			66	33	0.997476
913		33	66		0.997476
920		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain