SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54422

Length: 194 nt

UniGene Fasta

>uagpf_v2_unigene54422
GGAGAGAAGGAGTGGTACTTCTTCACCCCACGGGATAGAAAGTACCCAAATGGGTCTAGGCCCAACAGGGCTGCTGGTACTGGATATTGGAAAGCTACAGGTGCTGATAAACCCATCAGTGTCAAAGGAGGAAAGAAGCGAGTGGGCATCAAGAAGGCTCTTGTCTTCTATGCTGGAAAAGCACCCAAAGGCTC

Ace file of the UniGene uagpf_v2_unigene54422

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16071	1/2
SustainPine v2.0	sp_v2.0_unigene61001	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	NAC protein 1 [Elaeis guineensis] gb\|ABB72844.1\| NAC protein 1 splice variant 2 [Elaeis guineensis]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nac1 transcription factor	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 64 - 387

Fln protein: GEKEWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPISVKGGKKRVGIKKALVFYAGKAPKG

Protein Length: 65

Fln nts: GGAGAGAAGGAGTGGTACTTCTTCACCCCACGGGATAGAAAGTACCCAAATGGGTCTAGGCCCAACAGGGCTGCTGGTACTGGATATTGGAAAGCTACAGGTGCTGATAAACCCATCAGTGTCAAAGGAGGAAAGAAGCGAGTGGGCATCAAGAAGGCTCTTGTCTTCTATGCTGGAAAAGCACCCAAAGGCTC

Fln Alignment:

uagpf_mira_rep_c85243___GEKEWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPISXXXXXXXXXXXXALVFYAGKAPKG
A9NZG8________________GEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGSNKRVGIKKALVFYVGKAPKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain