SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53794

Length: 491 nt

UniGene Fasta

>uagpf_v2_unigene53794
CGTCGTGACCTTGGCTGTCACTCAATTCTGGGCAGACTTCATCAACAAGAAGTTCATAGAGACAGGGCTCAAGCTCATGAAGCGGTTCGGGGAAGAGCATGCGACCGCGCGGAAAGAAATCGTGGAACAGTTTATCACTATGGAGGAGGGGATGAGGTCTATCTTGTCTGTCGGTCCTTATTTCTTAGGCGACAAGATGAGCTTAGCGGATGTGGCTCTTGTGCCCCTGGTTCCATGGCTGCCCTCATTTGAAGCCCTAGGGGAGCTGAAGTTCCCTGGGCCGGAGCAGTGCGGACGGATGCACAAATGGTTGGACGCCATGAGAGAGCTTCCGAACGTGGTGGCCTCCGTTCCACCCGCTGACTGGCTATCGCAGTACACTGCAACTCTACGCCGATTTATTGCAGAGCATTATCCTGGTGGAGCTTAGTGTATTATTATTGGATACCCTATGTTATAGCATTAACGTCAATATTTTCAACTTGTTTACC

Ace file of the UniGene uagpf_v2_unigene53794

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61975	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GST n=1 Tax=Ginkgo biloba RepID=A7E1W9_GINBI	-	-	1.0e-15	31%
FL-Next	tr=Tau class glutathione S-transferase; Pinus tabuliformis (Chinese pine) (Pinus leucosperma).	-	-	0.0	33%
Blast2go	hypothetical protein SELMODRAFT_271536 [Selaginella moellendorffii]	-	-	3.9746e-23	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q6DNI8

Fln msg: your sequence is shorter than subject: 143 - 228

Fln protein: VVTLAVTQFWADFINKKFIETGLKLMKRFGEEHATARKEIVEQFITMEEGMRSILSVGPYFLGDKMSLADVALVPLVPWLPSFEALGELKFPGPEQCGRMHKWLDAMRELPNVVASVPPADWLSQYTATLRRFIAEHYPGGA*

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTGGGCAGACTTCATCAACAAGAAGTTCATAGAGACAGGGCTCAAGCTCATGAAGCGGTTCGGGGAAGAGCATGCGACCGCGCGGAAAGAAATCGTGGAACAGTTTATCACTATGGAGGAGGGGATGAGGTCTATCTTGTCTGTCGGTCCTTATTTCTTAGGCGACAAGATGAGCTTAGCGGATGTGGCTCTTGTGCCCCTGGTTCCATGGCTGCCCTCATTTGAAGCCCTAGGGGAGCTGAAGTTCCCTGGGCCGGAGCAGTGCGGACGGATGCACAAATGGTTGGACGCCATGAGAGAGCTTCCGAACGTGGTGGCCTCCGTTCCACCCGCTGACTGGCTATCGCAGTACACTGCAACTCTACGCCGATTTATTGCAGAGCATTATCCTGGTGGAGCTTAG___TGTATTATTATTGGATACCCTATGTTATAGCATTAACGTCAATATTTTCAACTTGTTTACC

Fln Alignment:

uagpf_mira_rep_c80887___AVTQFWADFINKKFIETGLKL-MKRFGEEHATARKEIVEQFITMEEGMRSILSVG--PYFLGDKMSLADVALVPLVPWLPSFEALGELKFPGPEQCGRMHKWLDAMRELPNVVASVPPADWLSQYTATLR-RFI
Q6DNI8________________ARARFWADFVDKKIYDNGSALIMKCKGEAQEEAKRNMLE-YLGLLEGALDELSGGIKPYFGGEKFGYMDIAFIPFASWFQAWEVMGNWKIPLETQFPRLHEWVNACMERESVKKVLPHPEKVAEFAMQIRQRFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain