SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53690

Length: 375 nt

UniGene Fasta

>uagpf_v2_unigene53690
CGTCGTGACCTTGGCTGTCACTCACTTCGAAAATTTTCATTGCAGAAATCCGACGGTTCTCATCTGCTTGGGTTAGTTATGGCCGTAACCGTCTTGACCTTCGCCGTGATCTCGCCTCATTCGCCTTCTGCTTGCCCGGAGGAGCTCTACTCAGCAACTCGTACCTTCGCCTTTTCTTTTGTCACTTACTCTGCTCGGGCTAGGATGCCAGGGGATTGAAATTGTTTTGACTGCACATCCAACACAAATAAATAGACAGACATTGCAATACAAGCACCTGTAAATTGCGTATTTGTTCGAATATAATAATCGAGCAGACTTGGCCCATGAAGAGCGAGAATTGTTGACTGAATATTTGGTAAATTTTTGCTTTTG

Ace file of the UniGene uagpf_v2_unigene53690

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene80512	3/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoenolpyruvate carboxylase [Ricinus communis]	-	-	2.0e-13	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	phosphoenolpyruvate carboxylase	-	-	2.43984e-16	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	2.43984e-16	85%

Source	KEGGs	Term	e value	Identity
Blast2go	Pyruvate metabolism	00620	2.43984e-16	85%
Blast2go	Methane metabolism	00680	2.43984e-16	85%
Blast2go	Carbon fixation in photosynthetic organisms	00710	2.43984e-16	85%
Blast2go	Carbon fixation pathways in prokaryotes	00720	2.43984e-16	85%
Blast2go	Metabolic pathways	01100	2.43984e-16	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	2.43984e-16	85%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 873 aas, your sequence is shorter than subject: 124 - 1073

Fln protein: VVTLAVTHFENFHCRNPTVLICLG*LWP*PS*PSP*SRLIRLLLARRSSTQQLVPSPFLLSLTLLGLGCQGIEIVLTAHPTQINRQTLQYKHL*IAYLFEYNNRADLAHEERELLTEYLVNFCF

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCGAAAATTTTCATTGCAGAAATCCGACGGTTCTCATCTGCTTGGGTTAGTTATGGCCGTAACCGTCTTGACCTTCGCCGTGATCTCGCCTCATTCGCCTTCTGCTTGCCCGGAGGAGCTCTACTCAGCAACTCGTACCTTCGCCTTTTCTTTTGTCACTTACTCTGCTCGGGCTAGGATGCCAGGGGATTGAAATTGTTTTGACTGCACATCCAACACAAATAAATAGACAGACATTGCAATACAAGCACCTGTAAATTGCGTATTTGTTCGAATATAATAATCGAGCAGACTTGGCCCATGAAGAGCGAGAATTGTTGACTGAATATTTGGTAAATTTTTGCTTTTG

Fln Alignment:

uagpf_mira_rep_c80298___QGIEIVLTAHPTQINRQTLQYKHL*IAYLFEYNNRADLAHEERELLTEYL
C0PQ37________________QEVEIVLTAHPTQINRRTLQYKHLRIAHLLEYNDRADLSHEEREMLIEDL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
104		66		33	0.997464
108	33	33	33		0.997752
111		33		66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain