SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53113

Length: 216 nt

UniGene Fasta

>uagpf_v2_unigene53113
CGTCGTGACCTTGGCTGTCACTCAATTCGCAACTGGATCAGGAATATTGAGCAACATGCTGCTGACAATGTGAATAAAATATTGGTTGGCAACAAAGCAGATATGGATGAGAGCAAGCGGGCTGTTCCCACAGCACGGGCTCAAGCACTTGCAGATGAGTATGGCATCAAGTTCTTTGAGACTAGTGCAAAAACAAACTTGAATGTTGAGCAGGTT

Ace file of the UniGene uagpf_v2_unigene53113

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18847	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RABE1c n=6 Tax=rosids RepID=RAE1C_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ras-related protein ara-3	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3		IPR003577	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3		IPR015598	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPM3

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 72 - 216

Fln protein: RRDLGCHSIRNWIRNIEQHAADNVNKILVGNKADMDESKRAVPTARAQALADEYGIKFFETSAKTNLNVEQV

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGCAACTGGATCAGGAATATTGAGCAACATGCTGCTGACAATGTGAATAAAATATTGGTTGGCAACAAAGCAGATATGGATGAGAGCAAGCGGGCTGTTCCCACAGCACGGGCTCAAGCACTTGCAGATGAGTATGGCATCAAGTTCTTTGAGACTAGTGCAAAAACAAACTTGAATGTTGAGCAGGTT

Fln Alignment:

uagpf_mira_rep_c75905___HSIRNWIRNIEQHAADNVNKILVGNKADMDESKRAVPTARAQALADEYGIKFFETSAKTNLNVEQV
C0PPM3________________NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTARGQALADEFGIKFFETSAKTNLNVEQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain