SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52391

Length: 370 nt

UniGene Fasta

>uagpf_v2_unigene52391
CGTCGTGACCTTGGCTGTCACTCAGATATTTGAAAGATTCTTTCCTCAGAATGCTGCACGCTTGACTGTACCTGGAGGCCCTAGTGTGGCTTGCAGCACTGCCAAAGCTTTAGAATGGGATGCTGCATGGTCTAGGAACCCCGATCCTTCTGGCAGGGCTGCTTTAGGTGTTCATGTGGATGCTTACAAAGAAAATGCAGATATCGGCAATGGCGACGAGGAAGTATCAGCAGATTTTTCAATTAAAAAGCCAAAATTTCTAGATGGTGGTGTGAAAGTTGCAGTTGACGGTTGAGCCATAAGACATCCATACTTCTCAAATGTAGCTTTGGCTTAGTATATACTTGTGGAGCTCTTGGATGACTGAGGC

Ace file of the UniGene uagpf_v2_unigene52391

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14320	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Asparagine synthetase n=2 Tax=Pinaceae RepID=D9IXC8_PINPS	-	-	97%
FL-Next	tr=Asparagine synthetase; Pinus pinaster (Maritime pine).	-	-	96%
Blast2go	asparagine synthetase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	0.0	91%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		91%
Blast2go	Nitrogen metabolism	00910		91%
Blast2go	Metabolic pathways	01100		91%
Blast2go	Biosynthesis of secondary metabolites	01110		91%
Blast2go	Aspartate--ammonia ligase.	EC:6.3.1.1	-	91%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	91%
Blast2go	Cyanoamino acid metabolism	00460	91%
Blast2go	Nitrogen metabolism	00910	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	91%
Blast2go	asparagine biosynthetic process	GO:0006529	Biological Process	91%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	91%
Blast2go	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	aspartate-ammonia ligase activity	GO:0004071	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D9IXC8

Fln msg: your sequence is shorter than subject: 98 - 590

Fln protein: VVTLAVTQIFERFFPQNAARLTVPGGPSVACSTAKALEWDAAWSRNPDPSGRAALGVHVDAYKENADIGNGDEEVSADFSIKKPKFLDGGVKVAVDG*

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATATTTGAAAGATTCTTTCCTCAGAATGCTGCACGCTTGACTGTACCTGGAGGCCCTAGTGTGGCTTGCAGCACTGCCAAAGCTTTAGAATGGGATGCTGCATGGTCTAGGAACCCCGATCCTTCTGGCAGGGCTGCTTTAGGTGTTCATGTGGATGCTTACAAAGAAAATGCAGATATCGGCAATGGCGACGAGGAAGTATCAGCAGATTTTTCAATTAAAAAGCCAAAATTTCTAGATGGTGGTGTGAAAGTTGCAGTTGACGGTTGA___GCCATAAGACATCCATACTTCTCAAATGTAGCTTTGGCTTAGTATATACTTGTGGAGCTCTTGGATGACTGAGGC

Fln Alignment:

uagpf_mira_rep_c70976___IFERFFPQNAARLTVPGGPSVACSTAKALEWDAAWSRNPDPSGRAALGVHVDAYKENADIGNG-DEEVSADFSIKKPKFLDGGVKVAVD
D9IXC8________________IFERFFPQNAARLTVPGGPSVACSTAKALEWDAAWSRNPDPSGRAALGVHVDAYKENADIGNGNNEEVSADFSIKKPKFLDGGVKVAVE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
74		33	66		0.997476
75	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain