SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52360

Length: 211 nt

UniGene Fasta

>uagpf_v2_unigene52360
AAGAAGCTAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTGGTTGCTTATGGGGGTGCACCGATTCATCAACAGCTGCGAGACCTAGAGAGGGGTGTTGACATTCTTGTTGCAACTCCTGGACGTCTGGTGGATCTTCTTGAGAGAGCAAGAGTGTCACTGTCTGTGGTACAGTACCTGGCTCTAGATGAGGCTGATCGTATGCTTGA

Ace file of the UniGene uagpf_v2_unigene52360

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1925	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SYU7_RICCO	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	dead-box atp-dependent rna helicase 37-like	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	91%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	peroxisome	GO:0005777	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Distance to subject end: 262 aas, your sequence is shorter than subject: 69 - 593

Fln protein: EAKKFSYQTGVKVVVAYGGAPIHQQLRDLERGVDILVATPGRLVDLLERARVSLSVVQYLALDEADRML

Protein Length: 70

Fln nts: AAGAAGCTAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTGGTTGCTTATGGGGGTGCACCGATTCATCAACAGCTGCGAGACCTAGAGAGGGGTGTTGACATTCTTGTTGCAACTCCTGGACGTCTGGTGGATCTTCTTGAGAGAGCAAGAGTGTCACTGTCTGTGGTACAGTACCTGGCTCTAGATGAGGCTGATCGTATGCTTGA

Fln Alignment:

uagpf_mira_rep_c70777___EAKKFSYQTGVKVVVAYGGAPIHQQLRDLERGVDILVATPGRLVDLLERARVSLSVVQYLALDEADRML
C0PQ26________________ESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain