SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51468

Length: 608 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene51468

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10904	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAM13156.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15609.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29984.1\| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	20%
Blast2go	transducin family protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	76%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
76		33	66		0.997458
77	66		33		0.997458
81		33		66	0.997454
83			66	33	0.997456
274		75	25		0.996477
279	75		25		0.996477
281		25		75	0.996474
282	75	25			0.996474
283		75		25	0.996474
284			66	33	0.997452
286			25	75	0.99649
288	66			33	0.997452
289			33	66	0.997452
290	66			33	0.997452
293	66	33			0.997452
295		33	66		0.997452
308			85	14	0.993533
311	28		14	57	1.0
313		28		71	1.0
314	57		14	28	1.0
317	14		85		0.993535
318		14	85		0.993536
319		33		66	1.0
320		66		33	1.0
321	16		33		1.0
324	28		71		1.0
327		16		83	0.994512
328	16	16	66		0.988813
329	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain