SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49596

Length: 1068 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene49596

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5591	18/25
SustainPine v2.0	sp_v2.0_unigene60702	4/25

Source	Descriptions	Term	Type	Identity
AutoFact	peptide alpha-N-acetyltransferase [Arabidopsis thaliana] dbj\|BAB10599.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK96745.1\| Unknown protein [Arabidopsis thaliana] gb\|AAL47392.1\| unknown protein [Arabidopsis thaliana] gb\|AAM64579.1\| silencing gr	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	silencing group b protein	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptide alpha-N-acetyltransferase.	EC:2.3.1.88	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	95%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	95%
Blast2go	peptide alpha-N-acetyltransferase activity	GO:0004596	Molecular Function	95%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	95%
Blast2go	endomembrane system	GO:0012505	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	GNAT domain	IPR000182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV4

Fln msg: Overlapping hits, possible frame ERROR between 495 and 458,

Fln protein: MVCIRQATIDDLLAMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTECHGHITSLAVLRTHRKLGLATKLMTAAQKAMQEVFGAxxxxxxxxxxxxxxSFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLRVKSDGKHHHHHHHHSGVCCGGDGGDGKLQSAADKKSKE*

Protein Length: 193

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTAACGTCGTGACCTTGGCTGTCACTGATTTCTGCACATAAACTCTGATACACAATATATATTCCAGAGTTTAAGCACAATATATGTTCTAGGTTTATACCCACCGTGGTTTGCAGCC_-_ATGGTTTGCATTCGTCAAGCCACTATAGATGACCTGCTGGCAATGCAGACATGCAATCTGATGTGTCTGCCGGAGAATTACCAGATGAAGTATTACTTCTACCACATCCTCTCATGGCCGCAGCTTCTGTACGTGGCCGAGGATTACAACAAGAAAATTGTGGGTTATGTTCTGGCGAAAATGGAAGAGGAGTCCACGGAATGCCACGGCCACATAACCTCTCTGGCTGTGTTGCGTACGCACCGCAAACTGGGCCTTGCAACGAAGCTCATGACCGCAGCCCAGAAGGCAATGCAGGAGGTTTTTGGGGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCATTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCTGATGGTAAGCATCATCATCATCATCATCATCATTCTGGAGTGTGCTGTGGCGGAGACGGTGGCGATGGGAAATTACAGTCTGCAGCTGATAAAAAGAGCAAGGAATGA___ACCTGAATTGGAAGTGAAGCTGTTGAGATTTGCGGCCTTAGCGACCGCTTATGTTATGGTTAGCACATTGAACTCTTTTGCAGTAGATGTTTGGCCTGCAAATGATGATATGGATTCATATTGTTATTATGCTATTTTGCCCTTTTAATTTACCAGTCCTTAAGTTGTCTCCAAGGGCTACGTATTTCTTCCTGTTGTTGCTACTGGAATTCATTGCCTACTGTGAGATCGTGTTGAACTCTTTTCTTATAGATACTTGACTTACAAATGCTGATAATTTACTCATGTTGTGCTATTTGTCATTTATTGTATGACAGCCATTCAGTTGTCTTAAAAAATTATCTCTTGTT

Fln Alignment:

uagpf_mira_rep_c52210___MVCIRQATIDDLLAMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTECHGHITSLAVLRTHRKLGLATKLMTAAQKAMQEVFGAEYVxxxxxxxxxxTWLSFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLRXXXXXXXXXXXXXXXXXXXXXXXXXXX--LQSAADKKSKE
A9NSV4________________MVCIRQATIDDLLAMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTECHGHITSLAVLRTHRKLGLATKLMTAAQKAMHEVFGAEYVxxxxxxxxxx---AFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLKVKSDGKHHHHHHHHQHSGGCCSGDGGDGKLQSAVDKKSKE

SNPs (tot: 88)

Position	A %	C %	G %	T %	Probability
85		25		75	0.996479
86	75		25		0.996479
88	75		25		0.996479
90	75		25		0.996479
91	25			75	0.996479
92		25		75	0.996479
94		75		25	0.996479
95	75			25	0.996479
97	66	16	16		0.988813
98		16	83		0.994512
100		12	12	75	0.975373
101		12	12	75	0.975363
102	75		12	12	0.975357
103	71	28			1.0
104		14	71	14	0.984337
105		87		12	0.992555
107	87			12	0.992556
108		75	12		0.975346
109	75		12		0.975346
110	75	12		12	0.975357
112	71		28		1.0
113			14	85	0.993533
114	71	28			1.0
115	14			85	0.993533
116		14	85		0.993533
119	14	14		71	0.984337
120	14	85			0.993533
122	85	14			0.993533
123	14		85		0.993533
279		12		87	0.992556
287	14		85		0.993536
290			83	16	0.994512
291	83			16	0.994512
294	83	16			0.994512
301	83			16	0.994512
302	83	16			0.994512
303	16	83			0.994512
380			80	20	0.995493
389	20	80			0.995493
432		80		20	0.995495
433	80	20			0.995495
435		80		20	0.995497
436		80	20		0.995497
437	25	75			0.996473
438	75	25			0.996473
439		20	80		0.995495
440	80			20	0.995495
441	75			25	0.996473
445	75			25	0.996473
446	75		25		0.996473
452		20	80		0.995493
453	75			25	0.996473
454		33	66		0.997452
456	33		66		0.997452
495	57		14	28	1.0
496	50	30		20	1.0
499	63	18		18	0.999997
500		18	81		0.999994
502		72		9	0.999994
504			10	30	1.0
505	72		9	18	0.999994
506	50	30	20		1.0
507		80	20		0.999996
508		70		30	1.0
510			50	50	1.0
512			80	20	0.999996
514	18			45	1.0
515		20	80		0.999996
516			50	50	1.0
518	50		50		1.0
519		36		63	1.0
521		36		63	1.0
522	40	60			1.0
640	90		10		0.90298
643	90		10		0.90298
706		12		87	0.992554
867		33		66	0.997452
887		75	25		0.996478
889			25	75	0.99649
891			25	75	0.99649
893	75	25			0.996476
894		25		75	0.996481
897	66		33		0.997452
898		66	33		0.997452
900	66			33	0.997452
904	33	66			0.997452
905		33		66	0.997452
907	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
620	643	CAT CAT CAT CAT CAT CAT CAT CAT	24

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain