SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49124

Length: 304 nt

UniGene Fasta

>uagpf_v2_unigene49124
CGTCGTGACCTTGGCTGTCACTCATCAGGGCTTATAGCGGTTGGAGTATTGTTAAGGAGGCATTTTATCTGGGAATCTTTCAAACATGCCGCGTGGTTTCCGAGTGTGCTTTTGCCTGCTATCCCTGTAACTGTGCTTACACTAGGGTTTCATGTGATAACTCCTTTTATATGCAAGGTCATGGGAAGAGATCCATATGAGGTTCGAAAGGCTATTCTATGTGGTGGAGCTGTACCTCTTGCAATGGTTTTATCATGGAATGTAGTTGTTTTAGGGCTTGCTAGGTCAAGTCCGGCTTCCAGGG

Ace file of the UniGene uagpf_v2_unigene49124

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11812	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	L-tyrosine transporter n=3 Tax=Andropogoneae RepID=B6TS04_MAIZE	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	61%
Blast2go	tyrosine-specific transport	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	72%
Blast2go	L-tyrosine transmembrane transporter activity	GO:0005302	Molecular Function	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%
Blast2go	plastid	GO:0009536	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aromatic amino acid permease	IPR002091	-	0.0	-
Sma3	Tryptophan/tyrosine permease	IPR018227	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8B8H0

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 101 - 504

Fln protein: RRDLGCHSSGLIAVGVLLRRHFIWESFKHAAWFPSVLLPAIPVTVLTLGFHVITPFICKVMGRDPYEVRKAILCGGAVPLAMVLSWNVVVLGLARSSPASR

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAGGGCTTATAGCGGTTGGAGTATTGTTAAGGAGGCATTTTATCTGGGAATCTTTCAAACATGCCGCGTGGTTTCCGAGTGTGCTTTTGCCTGCTATCCCTGTAACTGTGCTTACACTAGGGTTTCATGTGATAACTCCTTTTATATGCAAGGTCATGGGAAGAGATCCATATGAGGTTCGAAAGGCTATTCTATGTGGTGGAGCTGTACCTCTTGCAATGGTTTTATCATGGAATGTAGTTGTTTTAGGGCTTGCTAGGTCAAGTCCGGCTTCCAGGG

Fln Alignment:

uagpf_mira_rep_c51248___SGLIAVGVLLRRHFIWESFKHAAWFPSVLLPAIPVTVLTLGFHVITPFICKVMGRDPYEVRKAILCGGAVPLAMVLSWNVVVLGLARSSPASR
B8B8H0________________TALVVTGVSVGRSSMLRSLGYACWRPATILPAIPVTVLTLGFHVITPFICKIVGDSVYDARRAILIGGAVPLAMVLSWNAVILGLASSSGSAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain