SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48444

Length: 375 nt

UniGene Fasta

>uagpf_v2_unigene48444
CGTCGTGACCTTGGCTGTCACTCAACTTCTTGAACTACAAGATGAAAATTTGGCTAGCATGATTAGAATGCAGCAACAACGTACAAGGAACTTTTGGAGAGAACACTGGTGTGCAGATGCTCCATTTAAACTGAAGCGCCTTGCTCGTGACCCTGAACGTTTTCTTTGGGCAGTAAGTATTGCACAATCACGTTGCATTACAATGACTATGACAATTGGGGCCAAAGTCCAGGAGGCCAATATGCTAATTCCATATGCTGACATGATGAATCATTCATTTAACCCAAATTGTTCATATCGATGGCGTAAGAAAGATCAAATGCTAGAAGTGTCATCAATGTTGGACAATCCATAAAGGCAGGAGATGAGATGACA

Ace file of the UniGene uagpf_v2_unigene48444

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60137	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7T9R5_VITVI	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	67%
Blast2go	at4g20130-like protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid chromosome	GO:0009508	Cellular Component	0.0	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	SET domain	IPR001214	-	0.0	-
Sma3	Rubisco LS methyltransferase, substrate-binding domain	IPR015353	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SQ68

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 163 aas, your sequence is shorter than subject: 118 - 483

Fln protein: VVTLAVTQLLELQDENLASMIRMQQQRTRNFWREHWCADAPFKLKRLARDPERFLWAVSIAQSRCITMTMTIGAKVQEANMLIPYADMMNHSFNPNCSYRWRKKDQMLEVSSMLDNP*

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCTTGAACTACAAGATGAAAATTTGGCTAGCATGATTAGAATGCAGCAACAACGTACAAGGAACTTTTGGAGAGAACACTGGTGTGCAGATGCTCCATTTAAACTGAAGCGCCTTGCTCGTGACCCTGAACGTTTTCTTTGGGCAGTAAGTATTGCACAATCACGTTGCATTACAATGACTATGACAATTGGGGCCAAAGTCCAGGAGGCCAATATGCTAATTCCATATGCTGACATGATGAATCATTCATTTAACCCAAATTGTTCATATCGATGGCGTAAGAAAGATCAAATGCTAGAAGTGTCATCAATGTTGGACAATCCATAAAGGCAGGAGATGAGATGACA

Fln Alignment:

uagpf_mira_rep_c50233___LLELQDENLASMIRMQQQRTRNFWREHWCADAPFKLKRLARDPERFLWAVSIAQSRCITMTMTIGAKVQEANMLIPYADMMNHSFNPNCSYRWRKKDQMLEV
B9SQ68________________LLELQDQNLASIMRKQQHRALEFWEKNWHSGVPLKIKRLAREPERFIWAVSMAQSRCINMQMRVGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain