SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48147

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene48147
CGTCGTGACCTTGGCTGTCACTCAAGGTTTTGTGGGCTCAATGGCATTGTTTACAATAAGAGAGGTGCCCTCTTGGTCACCCAGAGCAACTCTGGGAAACTGTTTGAAGTTGACCTTCATGATGGATCAGTTCGTCTTGTGCAGACCTCAAAGACTTTGCCTTGGGCTGATGGGATTACTGTGCGGAGAGATGGGGTAGCTCTAGTGGTTTCTCATCATACAGCATGG

Ace file of the UniGene uagpf_v2_unigene48147

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21733	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SGL domain containing protein	-	-	7.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	58%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B6U4

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 76 - 365

Fln protein: RRDLGCHSRFCGLNGIVYNKRGALLVTQSNSGKLFEVDLHDGSVRLVQTSKTLPWADGITVRRDGVALVVSHHTAW

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTTTGTGGGCTCAATGGCATTGTTTACAATAAGAGAGGTGCCCTCTTGGTCACCCAGAGCAACTCTGGGAAACTGTTTGAAGTTGACCTTCATGATGGATCAGTTCGTCTTGTGCAGACCTCAAAGACTTTGCCTTGGGCTGATGGGATTACTGTGCGGAGAGATGGGGTAGCTCTAGTGGTTTCTCATCATACAGCATGG

Fln Alignment:

uagpf_mira_rep_c49808___FCGLNGIVYNKRGALLVTQSNSGKLFEVDLHDGSVRLVQTSKTLPWADGITVRRDGVALVVSHHTAW
A5B6U4________________FCGLNGILYISKGYLLAVQSNTGKMFKVDAEDGTARLVLLPRDLPWADGIAVRKDGIVVVVSQSKAW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain