SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47873

Length: 377 nt

UniGene Fasta

>uagpf_v2_unigene47873
CGTCGTGACCTTGGCTGTCACTCAATATCCCCGATGGTTGGATCGGTTGTCGTGCCGTTGGCTGTCTCTCAAACTTAATTCCTTCGAAAGTGCCTCTTGGGGAGGCCTTTAATGATTGTATTCCTCCTGGAAGTAGATATTCTGTCAAGCAAGTGTTGCACCAACAACGGGTTTTGATGAGAGAGGTGGCTTTGGTAATTGATCTGACAAATACTTCACGCTACTATCATCCTTCAGATTGGTCAAACAAGGGCATCAAGCATTTCAAGATTGCATGCAAAGGACGAGATGCAGTTCCAGACAATGAATCTGTAAATATTTTGTGTACGAAGCATTGCGTTTCTTCCATAATCATAAACAAAGTGGGCAGAACAAGT

Ace file of the UniGene uagpf_v2_unigene47873

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3474	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	mRNA capping enzyme-like protein [Arabidopsis thaliana] gb\|AEE74723.1\| mRNA capping enzyme-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=cDNA clone:J023105K02, full insert sequence; Oryza sativa subsp. japonica (Rice).	-	-	65%
Blast2go	mrna-capping enzyme-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.7.5-	-	0.0	74%
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	74%
Blast2go	DNA metabolic process	GO:0006259	Biological Process	74%
Blast2go	mRNA capping	GO:0006370	Biological Process	74%
Blast2go	mRNA guanylyltransferase activity	GO:0004484	Molecular Function	74%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	mRNA capping enzyme	IPR001339	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	mRNA capping enzyme, C-terminal	IPR013846	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	mRNA capping enzyme, bifunctional	IPR017074	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B7EQL6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 119 aas, your sequence is shorter than subject: 125 - 322

Fln protein: S*PWLSLNIPDGWIGCRAVGCLSNLIPSKVPLGEAFNDCIPPGSRYSVKQVLHQQRVLMREVALVIDLTNTSRYYHPSDWSNKGIKHFKIACKGRDAVPDNESVNILCTKHCVSSIIINKVGRTS

Protein Length: 126

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCCCCGATGGTTGGATCGGTTGTCGTGCCGTTGGCTGTCTCTCAAACTTAATTCCTTCGAAAGTGCCTCTTGGGGAGGCCTTTAATGATTGTATTCCTCCTGGAAGTAGATATTCTGTCAAGCAAGTGTTGCACCAACAACGGGTTTTGATGAGAGAGGTGGCTTTGGTAATTGATCTGACAAATACTTCACGCTACTATCATCCTTCAGATTGGTCAAACAAGGGCATCAAGCATTTCAAGATTGCATGCAAAGGACGAGATGCAGTTCCAGACAATGAATCTGTAAATATTTTGTGTACGAAGCATTGCGTTTCTTCCATAATCATAAACAAAGTGGGCAGAACAAGT

Fln Alignment:

uagpf_mira_rep_c49401___PDGWIGCRAVG-CLSNLIPSKVPLGEAFNDCIPPGSRYSVKQVLHQQRVLMREVALVIDLTNTSRYYHPSDWSNKGIKHFKIACKGRDAVPDNESVN
B7EQL6________________PDGWMNCPAFGEPIDKIIPSKVPLDETFNDLVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain