SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47613

Length: 288 nt

UniGene Fasta

>uagpf_v2_unigene47613
CGTCGTGACCTTGGCTGTCACTCAATTTTAGTGGAGTGGGCGTGGGAGCTGTACACGGAGGGGAGGCTGCTGGACGCGTCGGATCCAAAGCTGGGCGCAAAGGGTGGATATGATGAAGGCGAAATGGAGAAAGTGCTGAAATTGGGGTTATTGTGTACTCATCCAGAGCCGAAGAGCAGGTTGGGCATGCGACAGGTTTGCCGAATACTGAACGGTGAAGCTCAAGTTCCTCATGGATAGTAGGTGCAACTCGGGAGATGGGGTTATCCATGTTTGCTTAAAGAAGAG

Ace file of the UniGene uagpf_v2_unigene47613

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene76298	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana] sp\|Q9M345.1\|LRK42_ARATH RecName: Full=L-type lectin-domain containing receptor kinase IV.2; Short=Arabidopsis thaliana lectin-receptor kinase a4; Short=AthlecRK-a4; Short=LecRK-IV.2; Al	-	-	2.0e-13	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	l-type lectin-domain containing receptor kinase -like	-	-	1.13758e-33	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen development	GO:0009555	Biological Process	1.13758e-33	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.13758e-33	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: your sequence is shorter than subject: 80 - 636

Fln protein: RRDLGCHSILVEWAWELYTEGRLLDASDPKLGAKGGYDEGEMEKVLKLGLLCTHPEPKSRLGMRQVCRILNGEAQVPHG*

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAGTGGAGTGGGCGTGGGAGCTGTACACGGAGGGGAGGCTGCTGGACGCGTCGGATCCAAAGCTGGGCGCAAAGGGTGGATATGATGAAGGCGAAATGGAGAAAGTGCTGAAATTGGGGTTATTGTGTACTCATCCAGAGCCGAAGAGCAGGTTGGGCATGCGACAGGTTTGCCGAATACTGAACGGTGAAGCTCAAGTTCCTCATGGATAG___TAGGTGCAACTCGGGAGATGGGGTTATCCATGTTTGCTTAAAGAAGAG

Fln Alignment:

uagpf_mira_rep_c49007___ILVEWAWELYTEGRLLDASDPKLGAKGGYDEGEMEKVLKLGLLCTHPEPKSRLGMRQVCRILNGEAQVPHG
A9NVC0________________ILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEKVLKLGLLCSHPEPESRLGMRHVCQILDGEAPIPYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain