SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46959

Length: 425 nt

UniGene Fasta

>uagpf_v2_unigene46959
CGTCGTGACCTTGGCTGTCACTCAGAGGTTGAAAATTTTAAGTGGATCCCGTTCGGAGCAGGCAGAAGAGGATGTCCTGCACGGGACTTGGGAACGCGGGTTTTAGGGTTTGTGGTAGCGCAGCTTTTGCACTGTTTCAACTGGAAGCTTCCCGAGGAGACGAAAGGGAACCGGGAACTGGAGATGAGTGAAAGGCTAATTGGGGCGACAGCTGCCAGGGAGCATGAACTCTGGGCTGTTCCAACTCCTCGCCTTCCAATTCCATTATTGTAATTTTAGGTTGATATTTCTATTCTCAGACACATCCGGTCGAACCGGTTGAAATCACTATGTAAGGGACAGTCCTGCGTTTCTTTCTATCTTCAAAGTCTATATTGGAATTGAGCTGGTGACTCATTAGGTGCAGTGTTAACACACACCACGTG

Ace file of the UniGene uagpf_v2_unigene46959

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64089	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 [Pyrus communis]	-	-	3.0e-39	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	cytochrome p450	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NY70

Fln msg: your sequence is shorter than subject: 91 - 515

Fln protein: RRDLGCHSEVENFKWIPFGAGRRGCPARDLGTRVLGFVVAQLLHCFNWKLPEETKGNRELEMSERLIGATAAREHELWAVPTPRLPIPLL*

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGGTTGAAAATTTTAAGTGGATCCCGTTCGGAGCAGGCAGAAGAGGATGTCCTGCACGGGACTTGGGAACGCGGGTTTTAGGGTTTGTGGTAGCGCAGCTTTTGCACTGTTTCAACTGGAAGCTTCCCGAGGAGACGAAAGGGAACCGGGAACTGGAGATGAGTGAAAGGCTAATTGGGGCGACAGCTGCCAGGGAGCATGAACTCTGGGCTGTTCCAACTCCTCGCCTTCCAATTCCATTATTGTAA___TTTTAGGTTGATATTTCTATTCTCAGACACATCCGGTCGAACCGGTTGAAATCACTATGTAAGGGACAGTCCTGCGTTTCTTTCTATCTTCAAAGTCTATATTGGAATTGAGCTGGTGACTCATTAGGTGCAGTGTTAACACACACCACGTG

Fln Alignment:

uagpf_mira_rep_c48059___SEVENFKWIPFGAGRRGCPARDLGTRVLGFVVAQLLHCFNWKLPEETKGNRELEMSERLIGATAAREHELWAVPTPRLPIPLL
A9NY70________________SKVENFESIPFGAGRRGCPGRELATRVLEFVVAQLLQCFNWKLPDEISCDQELDMTEGINGPTIPRKHELFAVPTPRLPIPLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain