SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46510

Length: 273 nt

UniGene Fasta

>uagpf_v2_unigene46510
TTGGTGATATCAGAGGGTCCTCTTCTGCAGGAGGTATACTCATATCCTCAGACAATATGGGATCAAACTCTGATCTTGGCTGTCACTCGTATTTATAATGGGAAAGATACAGTTCAGGAATTTTTTATTGAAATGGAGTATCATGTGGAGCTTCTTGACTATGTATACAATGACAAGGAAATAATAGCTCGATTCAAAACTGATATTAATAATGAGCAGATTTTCTTCTCAGATTTGAATGGGTTTCAAATGATACGGAGAGATACATATGAC

Ace file of the UniGene uagpf_v2_unigene46510

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2240	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative glycosyl hydrolase [Oryza sativa Japonica Group]	-	-	54%
FL-Next	tr=Mannosidase alpha class 2a, putative; Ricinus communis (Castor bean).	-	-	64%
Blast2go	alpha-mannosidase-like protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	75%
Blast2go	cation binding	GO:0043169	Molecular Function	75%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	75%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RUH3

Fln msg: Distance to subject end: 256 aas, your sequence is shorter than subject: 91 - 1180

Fln protein: LVISEGPLLQEVYSYPQTIWDQTLILAVTRIYNGKDTVQEFFIEMEYHVELLDYVYNDKEIIARFKTDINNEQIFFSDLNGFQMIRRDTYD

Protein Length: 92

Fln nts: TTGGTGATATCAGAGGGTCCTCTTCTGCAGGAGGTATACTCATATCCTCAGACAATATGGGATCAAACTCTGATCTTGGCTGTCACTCGTATTTATAATGGGAAAGATACAGTTCAGGAATTTTTTATTGAAATGGAGTATCATGTGGAGCTTCTTGACTATGTATACAATGACAAGGAAATAATAGCTCGATTCAAAACTGATATTAATAATGAGCAGATTTTCTTCTCAGATTTGAATGGGTTTCAAATGATACGGAGAGATACATATGAC

Fln Alignment:

uagpf_mira_c47423___LVISEGPLLQEVYSYPQTIWDQTLILAVTRIYNGKDTVQEFFIEMEYHVELLDYVYNDKEIIARFKTDINNEQIFFSDLNGFQMIRRDTYD
B9RUH3________________MVISEGPLLQEVYSQPKTAWEQTPISHSTRIYEGDDAVQGLIVEKEYHVELIGQDFNDKELIVRYKTDIDNRRILYSDLNGFQMSRRETYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain