SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46133

Length: 326 nt

UniGene Fasta

>uagpf_v2_unigene46133
CGTCGTGACCTTGGCTGTCACTCAGTTATTGTTTTCGTAAGATATTGGGCCGCGACATACAGTGCAAACCCTAGAACCCGGGGAGTAATTGGGGTTTAGTATTCGTCATCAATCCACAGAGGCAGCCATGGATTCCGTGAGGAAGCAGTTGGACGCTCTAATGGGCGCCAATCGCAATGGCGACGTCAGGGAAGTCAACCGCAAGTATTATGATCGAGATGTCTGTCGACTGTATTTGGTCGGACTCTGCCCTCACGACCTCTTTCAGTTAACAAAAATGGATTTAGGTGCTTGCCCAAAAGTACACTCATTGCAGCTACGAAAAG

Ace file of the UniGene uagpf_v2_unigene46133

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28990	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	sarcoplasmic reticulum protein-like protein [Oryza sativa Japonica Group] gb\|AAS07364.1\| sarcoplasmic reticulum protein (with alternative splicing) [Oryza sativa Japonica Group] gb\|ABF99835.1\| RNA-binding protein Luc7-like 2, putative, expressed [Oryza sa	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	rna-binding protein luc7-like expressed	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	LUC7-related	IPR004882	-	-
Sma3	Pre-mRNA-splicing factor 38	IPR005037	-	-
Sma3	U2 snRNP auxilliary factor, large subunit, splicing factor	IPR006529	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Domain of unknown function DUF1777	IPR013957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABV1

Fln msg: Distance to subject end: 356 aas, your sequence is shorter than subject: 66 - 422

Fln protein: MDSVRKQLDALMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHDLFQLTKMDLGACPKVHSLQLRK

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTGTTTTCGTAAGATATTGGGCCGCGACATACAGTGCAAACCCTAGAACCCGGGGAGTAATTGGGGTTTAGTATTCGTCATCAATCCACAGAGGCAGCC_-_ATGGATTCCGTGAGGAAGCAGTTGGACGCTCTAATGGGCGCCAATCGCAATGGCGACGTCAGGGAAGTCAACCGCAAGTATTATGATCGAGATGTCTGTCGACTGTATTTGGTCGGACTCTGCCCTCACGACCTCTTTCAGTTAACAAAAATGGATTTAGGTGCTTGCCCAAAAGTACACTCATTGCAGCTACGAAAAG

Fln Alignment:

uagpf_mira_rep_c46868___MDSVRKQLDALMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHDLFQLTKMDLGACPKVHSLQLRK
D5ABV1________________MDSLRKQLDTLMGTNRNGDVTEIKRNYYDRDVCRLYLAGLCPHDLFQLTKMDLGACSKVHSLQLRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain