SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45983

Length: 166 nt

UniGene Fasta

>uagpf_v2_unigene45983
CGTCGTGACCTTGGCTGTCACTCAGCTCAAGATTTCAACCTTTATGCCTTTAATGAAGGACAATATGAGAATGCCGCACATCTTCACTCAAAGGCTCAACAGATTTGTGCTGTTTTGTACCCGGGAGATGCCACAGAAGAAGGAAAGCTTCTGCGCTTGAAGCAGC

Ace file of the UniGene uagpf_v2_unigene45983

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2796	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase n=1 Tax=Ricinus communis RepID=B9S366_RICCO	-	-	78%
FL-Next	sp=Alpha-glucan phosphorylase, H isozyme; Triticum aestivum (Wheat).	-	-	83%
Blast2go	alpha-glucan h isozyme-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphorylase.	EC:2.4.1.1	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	88%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	88%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	0.0	-
Sma3	Glycosyl transferase, family 35	IPR000811	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LKJ3

Fln msg: Distance to subject end: 541 aas, your sequence is shorter than subject: 55 - 832

Fln protein: RRDLGCHSAQDFNLYAFNEGQYENAAHLHSKAQQICAVLYPGDATEEGKLLRLKQ

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCAAGATTTCAACCTTTATGCCTTTAATGAAGGACAATATGAGAATGCCGCACATCTTCACTCAAAGGCTCAACAGATTTGTGCTGTTTTGTACCCGGGAGATGCCACAGAAGAAGGAAAGCTTCTGCGCTTGAAGCAGC

Fln Alignment:

uagpf_mira_rep_c46647___SAQDFNLYAFNEGQYENAAHLHSKAQQICAVLYPGDATEEGKLLRLKQ
Q9LKJ3________________TAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDATEEGKLLRLKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain