SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45854

Length: 224 nt

UniGene Fasta

>uagpf_v2_unigene45854
CGTCGTGACCTTGGCTGTCACTCATGGGGATCAAAGGCTTTTAGTATATGAATACATGCCACTGGGATCACTGGAAGACCATCTGCATGATCTTTCACCAGATAAAGAGCCGTTGGATTGGAACAGGAGAATGAAAATAGCGGCAGGTGCTGCAAAAGGGTTGGAATACTTGCATGATAAAGCCAATCCACCAGTTATATACAGAGACTTGAAATCCTCTAATA

Ace file of the UniGene uagpf_v2_unigene45854

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67492	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine protein kinase PBS1 (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HMQ3_POPTR	-	-	1.96182e-44	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	serine threonine protein kinase	-	-	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 74 - 458

Fln protein: VVTLAVTHGDQRLLVYEYMPLGSLEDHLHDLSPDKEPLDWNRRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSN

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGGATCAAAGGCTTTTAGTATATGAATACATGCCACTGGGATCACTGGAAGACCATCTGCATGATCTTTCACCAGATAAAGAGCCGTTGGATTGGAACAGGAGAATGAAAATAGCGGCAGGTGCTGCAAAAGGGTTGGAATACTTGCATGATAAAGCCAATCCACCAGTTATATACAGAGACTTGAAATCCTCTAATA

Fln Alignment:

uagpf_mira_rep_c46468___GDQRLLVYEYMPLGSLEDHLHDLSPDKEPLDWNRRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSN
D5AAA3________________GDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain