SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45092

Length: 232 nt

UniGene Fasta

>uagpf_v2_unigene45092
CGTCGTGACCTTGGCTGTCACTATTTCTTATCCATGAGTCAGCATCATGGTGTTAGACCAAGAGTGGAGCACTATGTCTGCATGGTAGATATTCTTGGTCGTTCAGGGCACTTGGATGAAGCAGAGGACCTTATCAACTCCATCCCTTATAAGCCTGATGCTATTCTGTGGAAGGCCTTGCTTGGTGCTTGCAGAGTCCATGGAAACCTTGATATAGGCAGACGTGCAGCAG

Ace file of the UniGene uagpf_v2_unigene45092

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67638	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic- partial	-	-	1.30917e-25	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 77 - 370

Fln protein: RRDLGCHYFLSMSQHHGVRPRVEHYVCMVDILGRSGHLDEAEDLINSIPYKPDAILWKALLGACRVHGNLDIGRRAA

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTATTTCTTATCCATGAGTCAGCATCATGGTGTTAGACCAAGAGTGGAGCACTATGTCTGCATGGTAGATATTCTTGGTCGTTCAGGGCACTTGGATGAAGCAGAGGACCTTATCAACTCCATCCCTTATAAGCCTGATGCTATTCTGTGGAAGGCCTTGCTTGGTGCTTGCAGAGTCCATGGAAACCTTGATATAGGCAGACGTGCAGCAG

Fln Alignment:

uagpf_mira_rep_c45336___DLGCHYFLSMSQHHGVRPRVEHYVCMVDILGRSGHLDEAEDLINSIPYKPDAILWKALLGACRVHGNLDIGRRA
A9P0W0________________DEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain