SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44598

Length: 198 nt

UniGene Fasta

>uagpf_v2_unigene44598
CGTCGTGACCTTGGCTGTCACTGAGACCCCCGAACAGTCTCCGGGTATTTACCTATGCAGAGCTCAGGGCTGCAACCAAGAATTTCAGTCGCTCCCTCATGCTTGGAGAAGGTGGATTTGGGTCTGTGTACAGAGGTTTGATTAAAAGCCTTGACGATCCCCATGCCAAAGTTGAGGTAGCTGTGAAGCAACTCAACA

Ace file of the UniGene uagpf_v2_unigene44598

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1649	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein serine/threonine kinase [Lophopyrum elongatum] gb\|AAK11674.1\|AF339747_1 protein kinase [Lophopyrum elongatum]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein kinase chloroplast	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 332 aas, your sequence is shorter than subject: 65 - 458

Fln protein: S*PWLSLRPPNSLRVFTYAELRAATKNFSRSLMLGEGGFGSVYRGLIKSLDDPHAKVEVAVKQLN

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTGAGACCCCCGAACAGTCTCCGGGTATTTACCTATGCAGAGCTCAGGGCTGCAACCAAGAATTTCAGTCGCTCCCTCATGCTTGGAGAAGGTGGATTTGGGTCTGTGTACAGAGGTTTGATTAAAAGCCTTGACGATCCCCATGCCAAAGTTGAGGTAGCTGTGAAGCAACTCAACA

Fln Alignment:

uagpf_mira_rep_c44560___RVFTYAELRAATKNFSRSLMLGEGGFGSVYRGLIKSLDDPHAKVEVAVKQLN
D5AAA3________________QTFTFRELAAATKNFRPECLLGEGGFGRVYRGRLESTGQ-----AVAVKQLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain