SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44313

Length: 186 nt

UniGene Fasta

>uagpf_v2_unigene44313
CGTCGTGACCTTGGCTGTCACTCATATCTCTTTATTCTTTGTGGTATTGACCACATTTTTAATCCCTATTTGCATTTTAGTAGGTTGGTCCAGTACGGAAAGTTATGGGAAAGAGTATGTTATAGTATTTCTAATTTGCGAATTTCTCATGATTGCCGTGTTTTGCATGCTGGATCTTTTACTATT

Ace file of the UniGene uagpf_v2_unigene44313

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2990	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 n=35 Tax=Magnoliophyta RepID=NU4M_ARATH	-	-	87%
FL-Next	sp=NADH-ubiquinone oxidoreductase chain 4; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	82%
Blast2go	nadh dehydrogenase subunit 4	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	88%
Blast2go	ATP synthesis coupled electron transport	GO:0042773	Biological Process	88%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	88%
Blast2go	respiratory chain	GO:0070469	Cellular Component	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	mitochondrial membrane	GO:0031966	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93313

Fln msg: Distance to subject end: 353 aas, your sequence is shorter than subject: 61 - 495

Fln protein: VVTLAVTHISLFFVVLTTFLIPICILVGWSSTESYGKEYVIVFLICEFLMIAVFCMLDLLL

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATCTCTTTATTCTTTGTGGTATTGACCACATTTTTAATCCCTATTTGCATTTTAGTAGGTTGGTCCAGTACGGAAAGTTATGGGAAAGAGTATGTTATAGTATTTCTAATTTGCGAATTTCTCATGATTGCCGTGTTTTGCATGCTGGATCTTTTACTATT

Fln Alignment:

uagpf_mira_rep_c44146___LAVTHISLFFVVLTTFLIPICILVGWSSTESYGKEYVIVFLICEFLMIAVFCMLDLLL
P93313________________LGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain