SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44052

Length: 221 nt

UniGene Fasta

>uagpf_v2_unigene44052
CGTCGTGACCTTGGCTGTCACTCATTTTTGGCAAGTGCTGAGAAGGATTATGCAGCTTTACTATCAGCTTTCACAGAGATGGGCCTCCGCTTACGATTGGATGTGCCAGAAGAGTCTATGGCAGCTATTAATTTGCTTTTCCGTCAGACAACTCCAGCAAAAGAAGCCCTTGAAAATGTGAAAACTTTGAATAAAGAAAGGGAAAGTAACATGAAGAGTGT

Ace file of the UniGene uagpf_v2_unigene44052

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-lactamase multi-domain protein	-	-	4.0e-37	31%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	abc1 family protein	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	lipopolysaccharide core region biosynthetic process	GO:0009244	Biological Process	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-related	IPR001466	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase, active site	IPR017440	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H3C3

Fln msg: Distance to subject end: 586 aas, your sequence is shorter than subject: 73 - 978

Fln protein: RRDLGCHSFLASAEKDYAALLSAFTEMGLRLRLDVPEESMAAINLLFRQTTPAKEALENVKTLNKERESNMKS

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGGCAAGTGCTGAGAAGGATTATGCAGCTTTACTATCAGCTTTCACAGAGATGGGCCTCCGCTTACGATTGGATGTGCCAGAAGAGTCTATGGCAGCTATTAATTTGCTTTTCCGTCAGACAACTCCAGCAAAAGAAGCCCTTGAAAATGTGAAAACTTTGAATAAAGAAAGGGAAAGTAACATGAAGAGTGT

Fln Alignment:

uagpf_mira_rep_c43758___FLASAEKDYAALLSAFTEMGLRLRLDVPEESMAAINLLFRQTTPAKEALENVKTLNKERESNMK
F6H3C3________________FLASAEGDHVALLSALSEMGLRLRLDLPDQAMEVATVFFRSSTPASEALENMRSLSKQRTKNMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain