SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43914

Length: 357 nt

UniGene Fasta

>uagpf_v2_unigene43914
CGTCGTGACCTTGGCTGTCACTCAAGTAGAGATGCTGCAGATTCTTTGAGCATTAGTAAAGATCATCGTTTCACTGAATATAATGAACTCGAAGGTCAGAGGTTCGAATCCCAGCAGCTGTCGGCATCATCATTATCAGATTCAACGGAAGCCCAGAGCTCAAATTCAAATAGCTGGTCATTTGCCCGGCCGCCATGCCGAGCTCCACCAAAGCCTATTGTGCCAAAAATAAACTTTGGTGGTCGCATTGTATACAGCAGAACATGGTCGGAAGTTGAAAAAGCTACCTTGGAACTTTTGCAAATTGTAGAATCCAAGAAGGCAAATGTGACAGGAAGGTGCCTCTGGGCTTGGACT

Ace file of the UniGene uagpf_v2_unigene43914

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39812	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Werner Syndrome-like exonuclease [Arabidopsis thaliana] sp\|Q84LH3.1\|WEX_ARATH RecName: Full=Werner Syndrome-like exonuclease gb\|AAO33765.1\| Werner Syndrome-like exonuclease [Arabidopsis thaliana] gb\|AAR24686.1\| At4g13870 [Arabidopsis thaliana] gb\|AEE83339	-	-	5.0e-28	41%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%
Blast2go	werner syndrome-like exonuclease	-	-	7.90178e-41	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	7.90178e-41	68%
Blast2go	protein binding	GO:0005515	Molecular Function	7.90178e-41	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SNR4

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 119 - 301

Fln protein: RRDLGCHSSRDAADSLSISKDHRFTEYNELEGQRFESQQLSASSLSDSTEAQSSNSNSWSFARPPCRAPPKPIVPKINFGGRIVYSRTWSEVEKATLELLQIVESKKANVTGRCLWAWT

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTAGAGATGCTGCAGATTCTTTGAGCATTAGTAAAGATCATCGTTTCACTGAATATAATGAACTCGAAGGTCAGAGGTTCGAATCCCAGCAGCTGTCGGCATCATCATTATCAGATTCAACGGAAGCCCAGAGCTCAAATTCAAATAGCTGGTCATTTGCCCGGCCGCCATGCCGAGCTCCACCAAAGCCTATTGTGCCAAAAATAAACTTTGGTGGTCGCATTGTATACAGCAGAACATGGTCGGAAGTTGAAAAAGCTACCTTGGAACTTTTGCAAATTGTAGAATCCAAGAAGGCAAATGTGACAGGAAGGTGCCTCTGGGCTTGGACT

Fln Alignment:

uagpf_mira_rep_c43542___PCRAPPKPIVPKINFGGRIVYSRTWSEVEKATLELLQIVESKK
D7SNR4________________PCQENFKMRLPKINFGGHIVYSRTVTEVEKATAELLKIVETKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain