SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43812

Length: 327 nt

UniGene Fasta

>uagpf_v2_unigene43812
CGTCGTGACCTTGGCTGTCACTCATCTTTACAAATGGAGAAAACGAAATTTTTTCTGGAAGATGCTCTCAGATCCTCCTCATTTCCATTTTGCGCTTTCATCACTGATATGTTCTGCACCACCATGTTCGATGTGACATCCAAACTAGAAATACCTTCCTACATTTTCTTCGCTTCCCAGGCTTCTGTGCTCTGCCTCATGTTCTACCTTCCAGCGCTTGTTAAAAAGATTGAAAAGTCATTCAAAGACGTTGACCTTCCTATTGAAGTGCCGGGCATTCGACCGATTGCAGGGAGAGATATGCCCAGCCCCATTCTTGACAGATCT

Ace file of the UniGene uagpf_v2_unigene43812

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60025	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	hydroquinone glucosyltransferase [Arabidopsis thaliana] sp\|Q9M156.1\|U72B1_ARATH RecName: Full=UDP-glycosyltransferase 72B1; AltName: Full=Arbutin synthase; AltName: Full=Probable hydroquinone glucosyltransferase pdb\|2VCE\|A Chain A, Characterization And En	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	62%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	62%
Blast2go	response to toxin	GO:0009636	Biological Process	62%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	62%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT89

Fln msg: Distance to subject end: 298 aas, your sequence is shorter than subject: 109 - 490

Fln protein: RRDLGCHSSLQMEKTKFFLEDALRSSSFPFCAFITDMFCTTMFDVTSKLEIPSYIFFASQASVLCLMFYLPALVKKIEKSFKDVDLPIEVPGIRPIAGRDMPSPILDRS

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTACAAATGGAGAAAACGAAATTTTTTCTGGAAGATGCTCTCAGATCCTCCTCATTTCCATTTTGCGCTTTCATCACTGATATGTTCTGCACCACCATGTTCGATGTGACATCCAAACTAGAAATACCTTCCTACATTTTCTTCGCTTCCCAGGCTTCTGTGCTCTGCCTCATGTTCTACCTTCCAGCGCTTGTTAAAAAGATTGAAAAGTCATTCAAAGACGTTGACCTTCCTATTGAAGTGCCGGGCATTCGACCGATTGCAGGGAGAGATATGCCCAGCCCCATTCTTGACAGATCT

Fln Alignment:

uagpf_mira_rep_c43375___MEKTKFFLEDALRS---SSFPFCAFITDMFCTTMFDVTSKLEIPSYIFFASQASVLCLMFYLPALVKKIEKSFKDVDLPIEVPGIRPIAGRDMPSPILDRS
C0PT89________________MEKSKGSVEIGLRSLLDSGSPVSAFITDFFCSAMFDVTAKLCIPTYVFLTSPASLLSLMLSIPKLVSEIPISFKDADFPVEVPGLPPISSRDLPTPLQDRS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain