SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43321

Length: 247 nt

UniGene Fasta

>uagpf_v2_unigene43321
CGTCGTGACCTTGGCTGTCACTCAATTTTCTGGATGTATTATGTAGCCAAAACATTAGCAGAGCAAGCAGCTCTTCAATATGGGTCAGAGGATCATGGTATTGAAGTAGTGACGATAGCTCCAGCTATTGTTGCAGGACCTTTTCTTACACCCACACTTCCGGCCAGCATTGAACAAGCGTTGCCATTCATCACAGGCAACGCTGAACATTTTGAATGGTTAAGGGAGCTTCATGATATCATGGGCT

Ace file of the UniGene uagpf_v2_unigene43321

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4326	1/2
SustainPine v2.0	sp_v2.0_unigene62540	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	dihydroflavonol 4-reductase	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	66%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW53

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 82 - 157

Fln protein: RRDLGCHSIFWMYYVAKTLAEQAALQYGSEDHGIEVVTIAPAIVAGPFLTPTLPASIEQALPFITGNAEHFEWLRELHDIMG

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTGGATGTATTATGTAGCCAAAACATTAGCAGAGCAAGCAGCTCTTCAATATGGGTCAGAGGATCATGGTATTGAAGTAGTGACGATAGCTCCAGCTATTGTTGCAGGACCTTTTCTTACACCCACACTTCCGGCCAGCATTGAACAAGCGTTGCCATTCATCACAGGCAACGCTGAACATTTTGAATGGTTAAGGGAGCTTCATGATATCATGGGCT

Fln Alignment:

uagpf_mira_rep_c42633___YYVAKTLAEQAALQYGSEDHGIEVVTIAPAIVAGPFLTPTLPASIEQALPFITGNAEHFEWLRELHDIMG
A9NW53________________YAVAKTLAEQAALQYGKEDPGLDVVTINPVLVGGPAITPNVPFSVEVILSLLTGNRQGIETLKGIQMTYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain