SustainPineDB

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Assembly info
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SSRs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43069

Length: 234 nt

UniGene Fasta

>uagpf_v2_unigene43069
CGTCGTGACCTTGGCTGTCACTCAAATGATTTTGAGAAATTTCAGCCTTAAAATCAATGCGGGGAGTAGCGTGGCATTCGTTGGAAAGAGCGGGTGTGGTAAGTCTACCATCATCGGTCTGATAGAGAGATTCTATGATCCGCTGAAGGGGAGAGTACTCATAGATGGCAAAGATATAAGGAGCTTCAATTTGCGGTCATTGAGAGAGCATATAGCTCTCGTAGGGCAGGAGCC

Ace file of the UniGene uagpf_v2_unigene43069

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23402	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative multidrug resistance protein n=8 Tax=Poaceae RepID=MDR_ORYSJ	-	-	58%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	54%
Blast2go	abc transporter b family member	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 77 - 1316

Fln protein: VVTLAVTQMILRNFSLKINAGSSVAFVGKSGCGKSTIIGLIERFYDPLKGRVLIDGKDIRSFNLRSLREHIALVGQE

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGATTTTGAGAAATTTCAGCCTTAAAATCAATGCGGGGAGTAGCGTGGCATTCGTTGGAAAGAGCGGGTGTGGTAAGTCTACCATCATCGGTCTGATAGAGAGATTCTATGATCCGCTGAAGGGGAGAGTACTCATAGATGGCAAAGATATAAGGAGCTTCAATTTGCGGTCATTGAGAGAGCATATAGCTCTCGTAGGGCAGGAGCC

Fln Alignment:

uagpf_mira_rep_c42240___ILRNFSLKINAGSSVAFVGKSGCGKSTIIGLIERFYDPLKGRVLIDGKDIRSFNLRSLREHIALVGQE
E6Y0T0________________VFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain