SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43049

Length: 229 nt

UniGene Fasta

>uagpf_v2_unigene43049
CGTCGTGACCTTGGCTGTCACTCAAATTCGATTAATCGGCATCCTGGTATTCCCCCCAGGATGGAACATTATGCTTGCATGGTTGATCTTCTAGGCCGGTCTGGCCATCTGGACGAGGCACATGGATTTCGATACAAAACATGCCCTTAGAGCCAAATGCTAGTGTGTGGGGATGCTTGCTCAGTGCCTGCAAAATTCATCACATGTTCCACTCGCAGAATATGTGGCA

Ace file of the UniGene uagpf_v2_unigene43049

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72892	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	3.0e-10	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic- partial	-	-	7.95778e-11	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Separated hits, possible frame ERROR between 126 and 132, Distance to subject end: 180 aas, your sequence is shorter than subject: 76 - 795

Fln protein: RRDLGCHSNSINRHPGIPPRMEHYACMVDLLGRSGHLDEAHxxxIQNMPLEPNASVWGCLLSACKIHHMFHSQNMW

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCGATTAATCGGCATCCTGGTATTCCCCCCAGGATGGAACATTATGCTTGCATGGTTGATCTTCTAGGCCGGTCTGGCCATCTGGACGAGGCACATGGxxxxxxGATACAAAACATGCCCTTAGAGCCAAATGCTAGTGTGTGGGGATGCTTGCTCAGTGCCTGCAAAATTCATCACATGTTCCACTCGCAGAATATGTGGCA

Fln Alignment:

uagpf_mira_rep_c42209___GIPPRMEHYACMVDLLGRSGHLDEAHGxxIQNMPLEPNASVWGCLLSACKIH
B8LQA8________________GLAPKLEHYACLVDLLGRAGHLDEANGxxIKNMSLEPDANVWGALLGACRIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain