SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41196

Length: 234 nt

UniGene Fasta

>uagpf_v2_unigene41196
CGTCGTGACCTTGGCTGTCACAACTAGTAGAAGGTTGGATTCTTGAAGTTTGTCATTAGTCAGAACATAGATGGACTGCATCTGAGATCTGGTATACCAAGGGAGAAGCTTGCTGAATTACATGGGAACTCCTTTAGAGAGATCTGTTCATCTTGTGGAAAAGAGTATATCCGGGACTTCGAAGTGGAGACTATAGGATTGAAAGAGACAGGACGGCGCTGTTCTGACCTAAAT

Ace file of the UniGene uagpf_v2_unigene41196

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8988	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	sirtuin 1 [Arabidopsis thaliana] gb\|AAG44850.1\|AF283757_1 sir2-like protein [Arabidopsis thaliana] dbj\|BAB09243.1\| transcription regulator Sir2-like protein [Arabidopsis thaliana] gb\|AED96677.1\| sirtuin 1 [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	sirtuin 1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Lysine biosynthesis	00300	80%
Blast2go	Fluorobenzoate degradation	00364	80%
Blast2go	Glutathione metabolism	00480	80%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	80%
Blast2go	Lipopolysaccharide biosynthesis	00540	80%
Blast2go	Sphingolipid metabolism	00600	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	protein deacetylation	GO:0006476	Biological Process	80%
Blast2go	chromatin silencing	GO:0006342	Biological Process	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	GO:0016811	Molecular Function	80%
Blast2go	NAD+ binding	GO:0070403	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	chromatin silencing complex	GO:0005677	Cellular Component	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent deacetylase, sirtuin family	IPR003000	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAS7

Fln msg: Distance to subject end: 295 aas, atg_distance in limit (1-15): atg_distance = 10, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 382

Fln protein: KVGFLKFVISQNIDGLHLRSGIPREKLAELHGNSFREICSSCGKEYIRDFEVETIGLKETGRRCSDLN

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACAACTAGTAGAAGGTTGGATTCTTGAAGTTTGTCATTAGTCAGAACATAGATGGACTGCATCTGAGATCTGGTATACCAAGGGAGAAGCTTGCTGAATTACATGGGAACTCCTTTAGAGAGATCTGTTCATCTTGTGGAAAAGAGTATATCCGGGACTTCGAAGTGGAGACTATAGGATTGAAAGAGACAGGACGGCGCTGTTCTGACCTAAAT

Fln Alignment:

uagpf_mira_rep_c39365___KVGFLKFVISQNIDGLHLRSGIPREKLAELHGNSFREICSSCGKEYIRDFEVETIGLKETGRRCSDLN
D5AAS7________________KVGFLKFIISQNIDGLHLRSGIPREKLSELHGNSFREICSSCGKEYVRDFEVETIGLKETGRRCSDLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain