SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41057

Length: 348 nt

UniGene Fasta

>uagpf_v2_unigene41057
CGTCGTGACCTTGGCTGTCACTCACGAGTGCTGGCAGATGGTACAATAACATTAGCAGGTTACCTGGGGCAGGGTTTACTTTTGAATGTAACACTGGTGCCTTGGTTGTCATTGGAGTTATTTCACTCATCGCAACTGGCTACACTTACAATTCTCTCTACTAGTAATTTATACTCTCATTCTTTCTGAAATCAAGTTGGCCGATGCTCTGGAGGAATCATTCAAAATGGACGGAACAACAGCCAGAATTTAATAAGTTGGTCAATTGTATGAATTTTTCTCTACTCGCGATCATCAAGTAGTCGAGAGCTTGGATCTAGTGTCATCATTCTTAATACACAGCCTTTA

Ace file of the UniGene uagpf_v2_unigene41057

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18828	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPX domain-containing membrane protein [Arabidopsis thaliana] sp\|Q9T050.1\|SPXM2_ARATH RecName: Full=SPX domain-containing membrane protein At4g11810 emb\|CAB44319.1\| putative protein [Arabidopsis thaliana] emb\|CAB78224.1\| putative protein [Arabidopsis thal	-	-	4.0e-30	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	spx domain-containing protein	-	-	1.41531e-43	84%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	SPX, N-terminal	IPR004331	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLM8

Fln msg: your sequence is shorter than subject: 63 - 702

Fln protein: RRDLGCHSRVLADGTITLAGYLGQGLLLNVTLVPWLSLELFHSSQLATLTILSTSNLYSHSF*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGAGTGCTGGCAGATGGTACAATAACATTAGCAGGTTACCTGGGGCAGGGTTTACTTTTGAATGTAACACTGGTGCCTTGGTTGTCATTGGAGTTATTTCACTCATCGCAACTGGCTACACTTACAATTCTCTCTACTAGTAATTTATACTCTCATTCTTTCTGA___AATCAAGTTGGCCGATGCTCTGGAGGAATCATTCAAAATGGACGGAACAACAGCCAGAATTTAATAAGTTGGTCAATTGTATGAATTTTTCTCTACTCGCGATCATCAAGTAGTCGAGAGCTTGGATCTAGTGTCATCATTCTTAATACACAGCCTTTA

Fln Alignment:

uagpf_mira_rep_c39074___DLGCHSRVLADGTITLAGYLGQGLLLNVTLVPWL
B8LLM8________________EAGTLARVLADGTITLAGYLGQGLLLNVTLLPTL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
109		33		66	0.997458
115		33	33	33	0.997752
118	33	33	33		0.997752
119	66	33			0.997464
125	66	33			0.997476
127			33	66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain