SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39878

Length: 365 nt

UniGene Fasta

>uagpf_v2_unigene39878
CGTCGTGACCTTGGCTGTCACTCAATTCCTTCCTTCTGCCCTTGCGTGCTGGTTAGTTTATTCCTCGCTAAGTTGGCAACCAAGTCTGTGGATGCATCCTCCTCTAAGACTGTTGGGTCTTTTGGGTATGTTTCCCCTGAGGCCAAGTTGAGGGACATGCAACAAAAGAGGGTGACGTTTACAGCTTTGGGATTGTTTTGTTGGAGCTTCTTACAGGGAGGAGAGCTGTTATGTTTATCAAAGATGAAGATGAGGAGGAAGATATTGTGAAGTGGGTGAAGAGGCAGTTACAGACGGGACAGATATCAGAGCTGTTTGATCCTGCCCTTTTGGAACTTGATCCCAAGTCCTCGGAGTGGGAGGAG

Ace file of the UniGene uagpf_v2_unigene39878

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8713	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Marchantia polymorpha RepID=A7VM29_MARPO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	receptor activity	GO:0004872	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 40 aas, your sequence is shorter than subject: 121 - 360

Fln protein: S*PWLSLNSFLLPLRAG*FIPR*VGNQVCGCILL*DCWVFWVCFP*GQVEGHATKEGDVYSFGIVLLELLTGRRAVMFIKDEDEEEDIVKWVKRQLQTGQISELFDPALLELDPKSSEWEE

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCTTCCTTCTGCCCTTGCGTGCTGGTTAGTTTATTCCTCGCTAAGTTGGCAACCAAGTCTGTGGATGCATCCTCCTCTAAGACTGTTGGGTCTTTTGGGTATGTTTCCCCTGAGGCCAAGTTGAGGGACATGCAACAAAAGAGGGTGACGTTTACAGCTTTGGGATTGTTTTGTTGGAGCTTCTTACAGGGAGGAGAGCTGTTATGTTTATCAAAGATGAAGATGAGGAGGAAGATATTGTGAAGTGGGTGAAGAGGCAGTTACAGACGGGACAGATATCAGAGCTGTTTGATCCTGCCCTTTTGGAACTTGATCCCAAGTCCTCGGAGTGGGAGGAG

Fln Alignment:

uagpf_mira_rep_c36806___GHATKEGDVYSFGIVLLELLTGRRAV--MFIKXXXXXXXIVKWVKRQLQTGQISELFDPALLEL
B8LPH3________________GRATEKGDVYSYGVVLLELITGKRPTDEAFVE---KGNNIVTWIRALVEDGCEEHAFDPDLVDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain