SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene39129

Length: 190 nt

UniGene Fasta

>uagpf_v2_unigene39129
CGTCGTGACCTTGGCTGTCACTCAGGGTTGGATCCAGCTTCAAGAAGCAAACTATGGAATGTTGTGAAGCAGGCCAAGGAGAACAGAGCAATCATTTTGACAACACATTCTATGGAAGAGGCAGAGGTGCTCTGTGATCGTATGGGAATTTTTGTGGACGGCCAACTACAGTGCATTGGAAACTCTAAAG

Ace file of the UniGene uagpf_v2_unigene39129

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8904	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter-like protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	abc transporter cholesterol phospholipid flippase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polyamine-transporting ATPase.	EC:3.6.3.31	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	polyamine-transporting ATPase activity	GO:0015417	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 63 - 788

Fln protein: RRDLGCHSGLDPASRSKLWNVVKQAKENRAIILTTHSMEEAEVLCDRMGIFVDGQLQCIGNSK

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTGGATCCAGCTTCAAGAAGCAAACTATGGAATGTTGTGAAGCAGGCCAAGGAGAACAGAGCAATCATTTTGACAACACATTCTATGGAAGAGGCAGAGGTGCTCTGTGATCGTATGGGAATTTTTGTGGACGGCCAACTACAGTGCATTGGAAACTCTAAAG

Fln Alignment:

uagpf_mira_rep_c35271___SGLDPASRSKLWNVVKQAKENRAIILTTHSMEEAEVLCDRMGIFVDGQLQCIGNS
C0PRA1________________TGMDPVTRRYVWDIIEDAKKGRAIVLTTHSMEEADILSDRIAIMARGKLRCIGTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain