SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene38315

Length: 365 nt

UniGene Fasta

>uagpf_v2_unigene38315
CGTCGTGACCTTGGCTGTCACTCAGGTGCTGCTGCGGACTTACGAGTTGGTATCAATTATGTTCCCAAAGAGTTTCTCTTGGATCCAAGGTATGCTGCACCTGAGCAATATATTATGAGTACACAGACCCCATCTGCCCCCCCTGCTCCCGTGGCTGCTGCACTTTCTCCTGTTCTCTGGCAGATGAACTTACCAGACAGATTTGATATTTACAGCGCAGGTCTTATCTTTCTACAGATGGCATTCCCATCTTTGCGCAATGATGTAGCCTTATCCAATTCAATCGCCAGCTTAAAAGGTGTGGATATAACATGGTTGCATGGAGAGAGTCAGTAGAACCACGGGCAAGTCCAGAGCTTCGTCGT

Ace file of the UniGene uagpf_v2_unigene38315

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4501	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SEI7_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	serine threonine-protein kinase chloroplastic-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	87%
Blast2go	regulation of photosynthesis, light reaction	GO:0042548	Biological Process	87%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Phosphorylase kinase, gamma catalytic subunit	IPR002291	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 54 aas, your sequence is shorter than subject: 112 - 517

Fln protein: RRDLGCHSGAAADLRVGINYVPKEFLLDPRYAAPEQYIMSTQTPSAPPAPVAAALSPVLWQMNLPDRFDIYSAGLIFLQMAFPSLRNDVALSNSIASLKGVDITWLHGESQ*

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGCTGCTGCGGACTTACGAGTTGGTATCAATTATGTTCCCAAAGAGTTTCTCTTGGATCCAAGGTATGCTGCACCTGAGCAATATATTATGAGTACACAGACCCCATCTGCCCCCCCTGCTCCCGTGGCTGCTGCACTTTCTCCTGTTCTCTGGCAGATGAACTTACCAGACAGATTTGATATTTACAGCGCAGGTCTTATCTTTCTACAGATGGCATTCCCATCTTTGCGCAATGATGTAGCCTTATCCAATTCAATCGCCAGCTTAAAAGGTGTGGATATAACATGGTTGCATGGAGAGAGTCAGTAGAACCACGGGCAAGTCCAGAGCTTCGTCGT

Fln Alignment:

uagpf_mira_c33533___GAAADLRVGINYVPKEFLLDPRYAAPEQYIMSTQTXXXXXXXXXXXXXXXXWQMNLPDRFDIYSAGLIFLQMAFPSLR
B8LKZ0________________GAATDLRVGKNYVPDRGMLDPDYCPPELYVLPEETPKPPPEPIAAILSPILWQLNSPDLFDMYSVGVIFLQMASPKLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain