SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35809

Length: 176 nt

UniGene Fasta

>uagpf_v2_unigene35809
ATTGCAGGCACCTCTGAATCTGAGGCAGTTGCAAGTCCTGTCTAGTATGCTGTCCAAGATTCCAAAGTCCATAGGGCAGCTGAAGCACCTAGAGAAGATTGTCCTCAGCGGTCTTGCTTGGAATGTTCAAATGCCATTCGAAAGTTTGCCAGAAGAGTTCTGTCATTTGGCGTCCT

Ace file of the UniGene uagpf_v2_unigene35809

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene51738	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	1.0e-31	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	nbs lrr	-	-	1.42746e-35	56%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Distance to subject end: 407 aas, your sequence is shorter than subject: 58 - 618

Fln protein: LQAPLNLRQLQVLSSMLSKIPKSIGQLKHLEKIVLSGLAWNVQMPFESLPEEFCHLAS

Protein Length: 59

Fln nts: ATTGCAGGCACCTCTGAATCTGAGGCAGTTGCAAGTCCTGTCTAGTATGCTGTCCAAGATTCCAAAGTCCATAGGGCAGCTGAAGCACCTAGAGAAGATTGTCCTCAGCGGTCTTGCTTGGAATGTTCAAATGCCATTCGAAAGTTTGCCAGAAGAGTTCTGTCATTTGGCGTCCT

Fln Alignment:

uagpf_mira_c23493___QAPLNLRQLQVLSSMLSKIPKSIGQLKHLEKIVLSGLAWNVQMPFESLPEEFCHLAS
B8LMZ7________________QAPLELRELNVYAP-LSMFPKSIGQMKHIEKIVVTCMPDLIHL--KSLPEEFCQLSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain