SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35442

Length: 150 nt

UniGene Fasta

>uagpf_v2_unigene35442
GCTGGAAATGGCAGCCTGTATTCGGAAAGTCTTGATGGGCAAGGGATCTCAGAATGGACTGCTAGACAGACCAAAGTTGTCGAAGCATTCCAACATGCTTGGACTGGATACAAGAATTATGCTATGGGTTCTGATGAACTCATGCCATTG

Ace file of the UniGene uagpf_v2_unigene35442

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene885	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative n=1 Tax=Ricinus communis RepID=B9S125_RICCO	-	-	63%
FL-Next	sp=Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	mannosyl-oligosaccharide -alpha-mannosidase mns3-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	77%
Blast2go	Mannosyl-oligosaccharide 1,2-alpha-mannosidase.	EC:3.2.1.113	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	77%
Blast2go	Various types of N-glycan biosynthesis	00513	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	77%
Blast2go	N-glycan processing	GO:0006491	Biological Process	77%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	77%
Blast2go	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	GO:0004571	Molecular Function	77%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	77%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93Y37

Fln msg: Distance to subject end: 468 aas, your sequence is shorter than subject: 50 - 624

Fln protein: AGNGSLYSESLDGQGISEWTARQTKVVEAFQHAWTGYKNYAMGSDELMPL

Protein Length: 51

Fln nts: GCTGGAAATGGCAGCCTGTATTCGGAAAGTCTTGATGGGCAAGGGATCTCAGAATGGACTGCTAGACAGACCAAAGTTGTCGAAGCATTCCAACATGCTTGGACTGGATACAAGAATTATGCTATGGGTTCTGATGAACTCATGCCATTG

Fln Alignment:

uagpf_mira_c23038___GSLYSESLDGQGIS----EWTARQTKVVEAFQHAWTGYKNYAMGSDELMPL
Q93Y37________________GQLRGSSTNGSTISNSDPKWAARQQSVKEAFDHAWSGYRKYAMGYDELMPI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain