SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35430

Length: 157 nt

UniGene Fasta

>uagpf_v2_unigene35430
GAACTCAATAAATTTAGGAAATCAGCTTCATTTGGCTTCCGAACCTCAAATGAGCCAGATTTGTCTTGGGTTCAAACCACGGTGAAAGAAATCCAGTTGATGCTGTGGAGGGATGCACTGTAGGTTTCTCTCTAGAAGCCTTAAGAAACAGACAGAC

Ace file of the UniGene uagpf_v2_unigene35430

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene163	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ank_2 domain containing protein	-	-	2.0e-10	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	zinc finger ccch domain-containing protein	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXG9

Fln msg: Overlapping hits, possible frame ERROR between 90 and 84, Distance to subject end: 24 aas, your sequence is shorter than subject: 52 - 360

Fln protein: ELNKFRKSASFGFRTSNEPDLSWVQTTxxxxPVDAVEGCTVGFSLEALRNRQ

Protein Length: 53

Fln nts: GAACTCAATAAATTTAGGAAATCAGCTTCATTTGGCTTCCGAACCTCAAATGAGCCAGATTTGTCTTGGGTTCAAACCACGxxxxxxxxxxxxCCAGTTGATGCTGTGGAGGGATGCACTGTAGGTTTCTCTCTAGAAGCCTTAAGAAACAGACAGAC

Fln Alignment:

uagpf_mira_c23024___ELNKFRKSASFGFRTSNEPDLSWVQTTVxxNPVDAVEGCTVGFSLEALRNRQ
A9NXG9________________ELNKFRKSASFGFRTSNEPDLSWVQTSVxxNPVDAVEGCTVGFSLEALRNRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain