SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35345

Length: 331 nt

UniGene Fasta

>uagpf_v2_unigene35345
CGTCGTGACCTTGGCTGTCACTCAGTTTTGGAGGTCTCATGAATCTGCAAGTTTTGAATCTCTACCTTGGCTGTTTGTCGGGTCCTCTTCCTACCGCAATAGGCGGTCTCCGCAAGCTCACCATTCTGGATCTTCATGGCAACCTTCTCAGCGGCTCCATTCCTCTGTCTCTCGGAGGATTGCGTTCTCTGCAGACGTTGGATATGTCTGACAATAGGCTCACGAGGAAGCTACCGGATTCACTTGGTATGTTATCGAATCTCTCTATCCTTTATCTAAATACAAACAAACTCAGCGGTAGCATCCCGCCTTCCATAGGAATATCAAGTCT

Ace file of the UniGene uagpf_v2_unigene35345

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37970	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9S2F4_RICCO	-	-	2.0e-25	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	serine-threonine protein plant-	-	-	2.48028e-28	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Guanine-nucleotide dissociation stimulator CDC25	IPR001895	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	LRAT-like domain	IPR007053	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 502 aas, your sequence is shorter than subject: 109 - 946

Fln protein: S*PWLSLSFGGLMNLQVLNLYLGCLSGPLPTAIGGLRKLTILDLHGNLLSGSIPLSLGGLRSLQTLDMSDNRLTRKLPDSLGMLSNLSILYLNTNKLSGSIPPSIGISS

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGGAGGTCTCATGAATCTGCAAGTTTTGAATCTCTACCTTGGCTGTTTGTCGGGTCCTCTTCCTACCGCAATAGGCGGTCTCCGCAAGCTCACCATTCTGGATCTTCATGGCAACCTTCTCAGCGGCTCCATTCCTCTGTCTCTCGGAGGATTGCGTTCTCTGCAGACGTTGGATATGTCTGACAATAGGCTCACGAGGAAGCTACCGGATTCACTTGGTATGTTATCGAATCTCTCTATCCTTTATCTAAATACAAACAAACTCAGCGGTAGCATCCCGCCTTCCATAGGAATATCAAGTCT

Fln Alignment:

uagpf_mira_c22916___LSLSFGGLMNLQVLNLYLGCLSGPLPTAIGGLRKLTILDLHXXXXXXXXXXXXXXXXXXQTLDMSDNRLTRKLPDSLGMLSNLSILYLNTNKL
C0PTA1________________IPVDLGSLQKLEWLGLSDNNLSGAIPVDLGSLQKLQILDLSDNALDNIIPPSLGNCSSLQDLSLSSNRLSGSIPHHLGNLSSLQTLFLSSNRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain