SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35124

Length: 260 nt

UniGene Fasta

>uagpf_v2_unigene35124
TTATTCCCATTTTTTACCAGGTAAAGCCTACAGATCTTCGGGGGGCACAGGAGCACAGAGGAGCCTATGCTGCAGCCTTAGACGAGCACGAAAGAAAGATAGCATGGGACGGACAACCGCGTCACAACTCCACCACTGTTTTAAAGTGGAGAAATGCTCTTTCCAGTGCTGCAGAAATTGTGGGTTCGATCTGGACACGTTTAACGGTGACCTGGGGCGGCTGCTGTTTAAAGTCTTCGAATGTGTGTTCGAAAGGGTTG

Ace file of the UniGene uagpf_v2_unigene35124

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36379	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	2.0e-35	50%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	51%
Blast2go	tir p-loop lrr disease resistance protein	-	-	1.19119e-39	61%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: Distance to subject end: 1302 aas, your sequence is shorter than subject: 86 - 1490

Fln protein: IPIFYQVKPTDLRGAQEHRGAYAAALDEHERKIAWDGQPRHNSTTVLKWRNALSSAAEIVGSIWTRLTVTWGGCCLKSSNVCSKGL

Protein Length: 87

Fln nts: TTATTCCCATTTTTTACCAGGTAAAGCCTACAGATCTTCGGGGGGCACAGGAGCACAGAGGAGCCTATGCTGCAGCCTTAGACGAGCACGAAAGAAAGATAGCATGGGACGGACAACCGCGTCACAACTCCACCACTGTTTTAAAGTGGAGAAATGCTCTTTCCAGTGCTGCAGAAATTGTGGGTTCGATCTGGACACGTTTAACGGTGACCTGGGGCGGCTGCTGTTTAAAGTCTTCGAATGTGTGTTCGAAAGGGTTG

Fln Alignment:

uagpf_mira_c22641___IPIFYQVKPTDLRGAQEHRGAYAAALDEHERKIAWDG-QPRHNSTTVLKWRNALSSAAEIVG
E9NZS6________________IPVFHKVKPTDLRRSQ-GEGVYATSLLNLEKKRKRDSDQPRYDSTTIENWRDALSRVADISG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain