SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34560

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene34560
CGTCGTGACCTTGGCTGTCACTCAAGTTTTTTGTTGCAGCACGGGTATATAAATTTTGGGGTTGCTGCCGCGATCAAAGGGGTTATGCCGCCGGAGGCGACGAAGGCGAATGTGATTGTGATCGGCGCGGGTTTGGCTGGTTTGGCTGCTGCGCGGCAGATGCTTCAGTCAGGATTCAAAGTCGTGGTTCTAGAGGGGCGAAAAAGGCCC

Ace file of the UniGene uagpf_v2_unigene34560

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene52635	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Arabidopsis RepID=LDL3_ARATH	-	-	4.0e-10	48%
FL-Next	sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Blast2go	lysine-specific histone demethylase 1 homolog 3-like	-	-	2.28939e-12	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone deacetylation	GO:0016575	Biological Process	2.28939e-12	83%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	2.28939e-12	83%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	2.28939e-12	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CAE3

Fln msg: Distance to subject end: 570 aas, your sequence is shorter than subject: 70 - 789

Fln protein: RRDLGCHSSFLLQHGYINFGVAAAIKGVMPPEATKANVIVIGAGLAGLAAARQMLQSGFKVVVLEGRKRP

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTTGTTGCAGCACGGGTATATAAATTTTGGGGTTGCTGCCGCGATCAAAGGGGTTATGCCGCCGGAGGCGACGAAGGCGAATGTGATTGTGATCGGCGCGGGTTTGGCTGGTTTGGCTGCTGCGCGGCAGATGCTTCAGTCAGGATTCAAAGTCGTGGTTCTAGAGGGGCGAAAAAGGCCC

Fln Alignment:

uagpf_mira_c21969___SFLLQHGYINFGVAAAIKGVMPPEATKANVIVIXXXXXXXXXXRQMLQSGFKVVVLEGRKRP
Q9CAE3________________NYLVTHGYINFGIAQAIKDKFPAQSSKSSVIIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain