SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34026

Length: 456 nt

UniGene Fasta

>uagpf_v2_unigene34026
CGTCGTGACCTTGGCTGTCACTCAGTTGGCTCAGAGATTATGGACAGATACCCAAGATATGGCCCACATCCAAGAGCGTGGTGATCTTGTTGTCACTTGTTGGATTTTTGGAACCGGGACGAGTATCAAAAGAGATGTTTGAGCTCAGCTTCACACCTGCGAAGAACAACCAGAGGTTATCATCCTCTGGGTGGAATCTTATCTCAACTCTCTTGAGCTTTTAAACTGTATCTTGGGTCTTGTACTTTAAACTAAGAGCACTGTGCATTTATTCCTCTCTCTTTATTCTATTGCTTGTTTTGGTAAAGAGAATTGTTTTATTCCTGCCGTTGTAATAACACGCTTCCACAGAGAATTGTTTGAATATGTATATGTGCAGTTTAGCATATATGATTGATTAACTTCTGTCTTGGTACTGAGTCAAGGGTACCAATGACTTGTAAACAGAATGTATAT

Ace file of the UniGene uagpf_v2_unigene34026

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10060	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3490 domain containing protein	-	-	62%
FL-Next	tr=Os02g0645100 protein; Oryza sativa subsp. japonica (Rice).	-	-	52%
Blast2go	protein	-	-	54%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	54%
Blast2go	protein complex	GO:0043234	Cellular Component	54%
Blast2go	cytoskeletal part	GO:0044430	Cellular Component	54%
Blast2go	microtubule cytoskeleton	GO:0015630	Cellular Component	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q6H638

Fln msg: Overlapping hits, possible frame ERROR between 91 and 72, your sequence is shorter than subject: 75 - 884

Fln protein: VVTLAVTQLAQRLWTDTQDMAHIxxxxxxxxSLVGFLEPGRVSKEMFELSFTPAKNNQRLSSSGWNLISTLLSF*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGCTCAGAGATTATGGACAGATACCCAAGATATGGCCCACATCxxxxxxxxxxxxxxxxxxxxxxxxTCACTTGTTGGATTTTTGGAACCGGGACGAGTATCAAAAGAGATGTTTGAGCTCAGCTTCACACCTGCGAAGAACAACCAGAGGTTATCATCCTCTGGGTGGAATCTTATCTCAACTCTCTTGAGCTTTTAAACTGTATCTTGGGTCTTGTACTTTAAACTAAGAGCACTGTGCATTTATTCCTCTCTCTTTATTCTATTGCTTGTTTTGGTAAAGAGAATTGTTTTATTCCTGCCGTTGTAATAACACGCTTCCACAGAGAATTGTTTGAATATGTATATGTGCAGTTTAGCATATATGATTGATTAACTTCTGTCTTGGTACTGAGTCAAGGGTACCAATGACTTGTAAACAGAATGTATAT

Fln Alignment:

uagpf_mira_c21314___QLAQRLWTDTQDMAHIQxxxxxxLSLVGFLEPGRVSKEMFELSFTPAKN-NQRLSSSGW
Q6H638________________QVARRLWTETKDLEHVRxxxxxxAKLIGLQEPGQVLKEMFGLSFAPQQQPTRRRSSNGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain