SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33946

Length: 157 nt

UniGene Fasta

>uagpf_v2_unigene33946
AATTACCATGGCTAGTGTTCTTCCTGCTTGTGCTGATTTATTGCTTTTGGAACAAGGTAAGCAGATCTATAGCTATGCAATTAAATCTGGATATGAATTTGATGTTGGTGTGGTCACTGGGCTTGTAAATGTGTATGCCAAATGTGGGGATGTTAAC

Ace file of the UniGene uagpf_v2_unigene33946

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67628	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial editing factor 21 [Arabidopsis thaliana] sp\|Q9SIL5.1\|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540 gb\|AAD25654.1\| unknown protein [Arabidopsis thaliana] gb\|AAY78689.1\| pentatricopeptide repeat-containing pro	-	-	6.0e-12	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	pentatricopeptide repeat-containing	-	-	9.88082e-25	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 320 aas, your sequence is shorter than subject: 52 - 795

Fln protein: ITMASVLPACADLLLLEQGKQIYSYAIKSGYEFDVGVVTGLVNVYAKCGDVN

Protein Length: 53

Fln nts: AATTACCATGGCTAGTGTTCTTCCTGCTTGTGCTGATTTATTGCTTTTGGAACAAGGTAAGCAGATCTATAGCTATGCAATTAAATCTGGATATGAATTTGATGTTGGTGTGGTCACTGGGCTTGTAAATGTGTATGCCAAATGTGGGGATGTTAAC

Fln Alignment:

uagpf_mira_c21224___ITMASVLPACADLLLLEQGKQIYSYAIKSGYEFDVGVVTGLVNVYAKCGDVN
B8LQA8________________ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain