SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33777

Length: 158 nt

UniGene Fasta

>uagpf_v2_unigene33777
GGCCATCAATGAACCTGAACTGTCTGAATCACAGGTTGAATTGAATGATCAGGAACAAGAAGATGAGGTGCTGGCATTGAAGGCAATTTATGAGGATGATGTGTTTGCTGTTGAAAGAGAAGATGGCAGCCCTCGTGCATTAAAGATGTCTATACATG

Ace file of the UniGene uagpf_v2_unigene33777

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8250	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-protein ligase RNF14 [Arabidopsis thaliana] gb\|AAF81330.1\|AC007767_10 Contains similarity to ring finger protein 14 from Homo sapiens gb\|NM_004290. It contains an IBR domain PF\|01485 [Arabidopsis thaliana] gb\|AAG60174.1\|AC084110_7 hypothetical p	-	-	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	50%
Blast2go	ring finger	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, B-box	IPR000315	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MU50

Fln msg: Distance to subject end: 460 aas, your sequence is shorter than subject: 52 - 642

Fln protein: AINEPELSESQVELNDQEQEDEVLALKAIYEDDVFAVEREDGSPRALKMSIH

Protein Length: 53

Fln nts: GGCCATCAATGAACCTGAACTGTCTGAATCACAGGTTGAATTGAATGATCAGGAACAAGAAGATGAGGTGCTGGCATTGAAGGCAATTTATGAGGATGATGTGTTTGCTGTTGAAAGAGAAGATGGCAGCCCTCGTGCATTAAAGATGTCTATACATG

Fln Alignment:

uagpf_mira_c21018___INEPELSESQVELNDQEQEDEVLALKAIYEDDVFAVEREDGSPRALKMSIH
B9MU50________________VEEPELSEEQLRINDQLQEDELLAMESIYGDNTFILERQRGL-RSFQIHIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain