SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33740

Length: 293 nt

UniGene Fasta

>uagpf_v2_unigene33740
CGTCGTGACCTTGGCTGTCACTCAACACATGCAAAATGGCTGACATTACAGAGGAGGGCATCTCAGTGGTGGAGGACCTCAACAGGCGGAGGCAACCATTCCCTGCAATGGAGGCTGTCTACTTTATTCGGCCGTCAAAGGAGAATGTGATCACGTTCATGTCTGATATGTCAGGAAATTCTCCGTTATACAAAAAGGCCTATGTTTTCTCAGTTCGCCTATCCCTAAAGATCTGGTTGGCCATATTAAAAGGGATATAAGTATTCTATCACGAATAGCTGCTTTAAGAGAGA

Ace file of the UniGene uagpf_v2_unigene33740

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11137	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	SNARE-interacting protein KEULE n=2 Tax=Arabidopsis RepID=KEULE_ARATH	-	-	71%
FL-Next	sp=Protein transport Sec1a; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	snare-interacting protein keule	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	vesicle docking involved in exocytosis	GO:0006904	Biological Process	85%
Blast2go	protein secretion	GO:0009306	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sec1-like protein	IPR001619	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5P7

Fln msg: Overlapping hits, possible frame ERROR between 209 and 191, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 524 aas, your sequence is shorter than subject: 97 - 673

Fln protein: S*PWLSLNTCKMADITEEGISVVEDLNRRRQPFPAMEAVYFIRPSKENVITFMSDMSGNSPLxxxxxxxxSSPIPKDLVGHIKRDISILSRIAALRE

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACACATGCAAAATGGCTGACATTACAGAGGAGGGCATCTCAGTGGTGGAGGACCTCAACAGGCGGAGGCAACCATTCCCTGCAATGGAGGCTGTCTACTTTATTCGGCCGTCAAAGGAGAATGTGATCACGTTCATGTCTGATATGTCAGGAAATTCTCCGTTAxxxxxxxxxxxxxxxxxxxxxxxxAGTTCGCCTATCCCTAAAGATCTGGTTGGCCATATTAAAAGGGATATAAGTATTCTATCACGAATAGCTGCTTTAAGAGAGA

Fln Alignment:

uagpf_mira_c20980___TCKMADITEEGISVVEDLNRRRQPFPAMEAVYFIRPSKENVITFMSDMSGNSPLYxxxxxxLSSPIPKDLVGHIKRDISILSRIAALRE
Q9C5P7________________SCKMADITDQGISLVEELFKRREPMPGMDAIYFIQPSKENIVMFLSDMSGREPLYxxxxxxFSSTIPKELVNHIKSDSSVLPRIGALRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain