SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33563

Length: 201 nt

UniGene Fasta

>uagpf_v2_unigene33563
CAGAGGTTTATGGGGAGAGGTAATCTTACTTGACGCACATGGTGGATCTGTAAATTTAGACGCCAATTCGTCGAACGAGCAGGGGCCTTCTAGAAACCCTGAAAGTCAAAATGTGGGAAACCGTCTCAACCCGAAAGGCAAAGTAGACAATGAAGGTGGGGAGAGCAGTGTCAAGTTAGCACTGGCCCAGCGGCGGTTCGC

Ace file of the UniGene uagpf_v2_unigene33563

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene435	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ulp1 protease family protein, putative [Solanum demissum]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	sentrin sumo-specific	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABE8

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 66 - 260

Fln protein: RGLWGEVILLDAHGGSVNLDANSSNEQGPSRNPESQNVGNRLNPKGKVDNEGGESSVKLALAQRRF

Protein Length: 67

Fln nts: CAGAGGTTTATGGGGAGAGGTAATCTTACTTGACGCACATGGTGGATCTGTAAATTTAGACGCCAATTCGTCGAACGAGCAGGGGCCTTCTAGAAACCCTGAAAGTCAAAATGTGGGAAACCGTCTCAACCCGAAAGGCAAAGTAGACAATGAAGGTGGGGAGAGCAGTGTCAAGTTAGCACTGGCCCAGCGGCGGTTCGC

Fln Alignment:

uagpf_mira_c20769___RGLWGEVILLDAHGGSVNLDANSSNEQGPSRNPESQNVGNRL-----NPKGKVDNEGGESSVKLA
D5ABE8________________RRLWGKVVFLDAHGGSVNLDANSSIKQRPSRNPESQNVENRVIVKLRNPKGKLDVGGGESSVELS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain