SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32815

Length: 164 nt

UniGene Fasta

>uagpf_v2_unigene32815
GATGGAGCAGCTAAGAGAGACGTCGTCTTATGGACTGCGATGATTTCAGGGTATTTACAGAATGGATATGCTGCCGATGCCATAATGTTGTTTCATGAAATGCAAAGGGCAAATGTGCCACCGGACGTGATTGCGATGGTTAGCGTGCTTTCAGCTTGTGCCCA

Ace file of the UniGene uagpf_v2_unigene32815

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene52089	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RV99_RICCO	-	-	2.0e-09	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	pentatricopeptide repeat-containing	-	-	8.55895e-13	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 54 - 394

Fln protein: DGAAKRDVVLWTAMISGYLQNGYAADAIMLFHEMQRANVPPDVIAMVSVLSACA

Protein Length: 55

Fln nts: GATGGAGCAGCTAAGAGAGACGTCGTCTTATGGACTGCGATGATTTCAGGGTATTTACAGAATGGATATGCTGCCGATGCCATAATGTTGTTTCATGAAATGCAAAGGGCAAATGTGCCACCGGACGTGATTGCGATGGTTAGCGTGCTTTCAGCTTGTGCCCA

Fln Alignment:

uagpf_mira_c19878___DGAAKRDVVLWTAMISGYLQNGYAADAIMLFHEMQRANVPPDVIAMVSVLSACA
B8LKN6________________DKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain