SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32320

Length: 138 nt

UniGene Fasta

>uagpf_v2_unigene32320
CGTCGTGACCTTGGCTGTCACTCATTCTAGTGGAACACAACTATATTTTCACTACTGAAGGTCATCCTTTTCCAGTACAAAGTTCCTGGCATGAGTGGGTTCCATCCATCTATAAGGAAGGTGATGCATTCGCATACA

Ace file of the UniGene uagpf_v2_unigene32320

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene524	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative n=1 Tax=Ricinus communis RepID=B9RB79_RICCO	-	-	73%
FL-Next	sp=Probable alpha-mannosidase I MNS5; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	glycoside hydrolase family 47 protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	80%
Blast2go	Mannosyl-oligosaccharide 1,2-alpha-mannosidase.	EC:3.2.1.113	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	80%
Blast2go	Various types of N-glycan biosynthesis	00513	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	80%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	80%
Blast2go	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	GO:0004571	Molecular Function	80%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	80%
Blast2go	endomembrane system	GO:0012505	Cellular Component	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SXC9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 76 aas, your sequence is shorter than subject: 45 - 574

Fln protein: S*PWLSLILVEHNYIFTTEGHPFPVQSSWHEWVPSIYKEGDAFAY

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAGTGGAACACAACTATATTTTCACTACTGAAGGTCATCCTTTTCCAGTACAAAGTTCCTGGCATGAGTGGGTTCCATCCATCTATAAGGAAGGTGATGCATTCGCATACA

Fln Alignment:

uagpf_mira_c19288___LVEHNYIFTTEGHPFPVQSSWHEWVPSIYKEGD
Q9SXC9________________VAKRNYIFTTEGHPIQVVSSWHEKLPETYFSGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain