SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31901

Length: 777 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31901

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16048	11/15
SustainPine v2.0	sp_v2.0_unigene60985	4/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LQY6_ARALL	-	-	4.0e-16	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	leucine-rich repeat family protein	-	-	0.0	70%

Full-Lengther Next Prediction

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
92		66		33	0.997471
93			66	33	0.997471
94		33		66	0.997471
97	33			66	0.997471
98			66	33	0.997471
99	66			33	0.997471
102			33	66	0.997471
218	75		25		0.996479
219			75	25	0.996479
223		75	25		0.996479
226		20	80		0.995498
228		20		80	0.995495
230			80	20	0.995496
231		25	75		0.996473
232	75			25	0.996473
233		20	80		0.995496
234		25	50	25	0.995533
235	60	20		20	0.992578
236	25		50	25	0.995533
237		75	25		0.996473
238			75	25	0.996473
240			60	20	0.99255
241	25	50	25		0.995533
242	75			25	0.996473
245		25	75		0.996473
250	25	75			0.996473
281			80	20	0.995493
311		40		60	1.0
313		14	85		0.993535
314	85		14		0.993535
320	14	85			0.993535
321		14		85	0.993535
324		83		16	0.994512
325	83		16		0.994512
336		16	83		0.994512
356	16		83		0.994512
399		66		33	0.997452
417	80	20			0.995497
419	80			20	0.995497
420	80	20			0.995497
426		20		80	0.995497
427		80		20	0.995497
431	75	25			0.996473
432		75		25	0.996473
437		25	75		0.996473
468	57	42			1.0
477		42		57	1.0
481			37	62	1.0
482			37	62	1.0
484	62			37	1.0
485	62		37		1.0
486			62	37	1.0
487		37	62		1.0
492	28	14			1.0
493	12		25	62	1.0
520	11	11	77		0.968143
523		11		88	0.923646
525			88	11	0.923695
527	11			88	0.923646
528		11	88		0.923646
529		11	88		0.923646
531			87	12	0.992554
532			12	87	0.992554
533			12	87	0.992554
535	85			14	0.993533
539	14			85	0.993533
541	85			14	0.993533
543	12			87	0.992554
555	88		11		0.923646
556		88		11	0.923646
558	11		88		0.923695
559		11	88		0.923695
561		88		11	0.923646
562	87			12	0.992554
564		87	12		0.992554
566	87			12	0.992554
568			87	12	0.992554
611		22	66		0.999999
642		12		87	0.992555

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain