SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31509

Length: 682 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31509

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13164	12/17
SustainPine v2.0	sp_v2.0_unigene18133	3/17

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI	-	-	82%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	pectin methylesterase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	66%
Blast2go	Starch and sucrose metabolism	00500	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	66%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	66%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	66%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	66%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
170	66		33		0.997461
172		33		66	0.997461
173		66	33		0.997461
174	66			33	0.997461
175		66	33		0.997461
177	66	33			0.997461
185		16	83		0.994514
186	66		16		0.988813
189	83		16		0.994514
190		83		16	0.994514
191		33	16	50	1.0
192	16	83			0.994515
195			83	16	0.994514
196	80			20	0.995493
197			20	80	0.995493
200		80		20	0.995493
202	80			20	0.995493
208		22		77	0.999999
209	11		88		0.923564
212	10			90	0.903076
222	90			10	0.903503
223	90	10			0.903503
314		88	11		0.923776
318		88		11	0.923776
320	11		88		0.92391
321		11	88		0.92391
331		14	85		0.993533
333	85	14			0.993533
339	14			85	0.993533
340	14	85			0.993533
346	16		83		0.994512
347	83		16		0.994512
356		20		80	0.999996
359	60	10			1.0
360	77			22	0.999999
361	77		22		0.999999
365	60	20	10	10	0.999999
370	70		30		1.0
371	10	20		70	0.999998
373	70	10	20		0.999998
375		18	72	9	0.999994
376	20		80		0.999996
377	9	18	72		0.999994
378		9	72	18	0.999994
379	72	18		9	0.999994
380	90		10		0.90298
383		20		80	0.999996
385		10		90	0.90298
386			90	10	0.90298
387	90	10			0.90298
411	90		10		0.90298
429	10		90		0.90298
447	10			90	0.90298
538		62	37		1.0
578		40		60	1.0
611		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain