SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30584

Length: 346 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene30584
ATAACTTTTAACCTAGGAAATTTCCCTGGCCATTGCTTGTTTTTACCGCTAAATTTTCCCCTACATTGATGTTGAAATTGTTGGACTTCTTGCAGCGTCGTGACCTTGGCTGTCACTCAAATATATGAAAAGCACTACGCCGCCCAGAAGAACGGGCCTAAAGAAAGCAATGAGTTATCATCCTGTGTGGATCAAGAAGAAGATCAATATATGGTGGCCGCTGCATCCACATCCCCTGCAGACATGGACGACAGCAAGCTGCTCATCAATCTGCCGCGAATCAATTCCCTGAACAGAATAAACTCTCTTCTGAAATTCCCCACCAGGGAGGTCATGAAGATGCCAG

Ace file of the UniGene uagpf_v2_unigene30584 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8081	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	pfam02365, NAM, No apical meristem (NAM) protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	nac protein 1	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NS66

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 79 aas, your sequence is shorter than subject: 115 - 324

Fln protein: ITFNLGNFPGHCLFLPLNFPLH*C*NCWTSCSVVTLAVTQIYEKHYAAQKNGPKESNELSSCVDQEEDQYMVAAASTSPADMDDSKLLINLPRINSLNRINSLLKFPTREVMKMP

Protein Length: 116

Fln nts: ATAACTTTTAACCTAGGAAATTTCCCTGGCCATTGCTTGTTTTTACCGCTAAATTTTCCCCTACATTGATGTTGAAATTGTTGGACTTCTTGCAGCGTCGTGACCTTGGCTGTCACTCAAATATATGAAAAGCACTACGCCGCCCAGAAGAACGGGCCTAAAGAAAGCAATGAGTTATCATCCTGTGTGGATCAAGAAGAAGATCAATATATGGTGGCCGCTGCATCCACATCCCCTGCAGACATGGACGACAGCAAGCTGCTCATCAATCTGCCGCGAATCAATTCCCTGAACAGAATAAACTCTCTTCTGAAATTCCCCACCAGGGAGGTCATGAAGATGCCAG

Fln Alignment:

uagpf_mira_c12961___QIYEKHYAAQKNGPKESNELSSCVDQEEDQYMVAAASTSPADMDDSKLLINLPRINSLNRINSLLKFPTREVMKMP
A9NS66________________RIYEKHYASQKAVPKESNELSSCVDPEEDQYMAPVASNSPPDMDDNKLLINLPRINSLNRINSLLKFPSREIMKMP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
229		33		66	0.997452
232		33	66		0.997452
233	33			66	0.997452
234		33	66		0.997452
236		66	33		0.997452
237	66			33	0.997452
238	33		66		0.997452
241	75	25			0.996474
250		25	75		0.99649

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain