SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30359

Length: 698 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene30359

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5550	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Trehalose-6-phosphate synthase n=1 Tax=Ginkgo biloba RepID=Q5D6D9_GINBI	-	-	76%
FL-Next	sp=Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	trehalose-phosphate synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	83%
Blast2go	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	83%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	83%
Blast2go	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Alpha,alpha-trehalose-phosphate synthase	IPR012766	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
261		50	50		1.0
264			50	50	1.0
268	50	50			1.0
269		50	50		1.0
274		50		50	1.0
276	50		50		1.0
279	50	50			1.0
281		50		50	1.0
331		40		60	1.0
332			20	80	0.995499
334		20	80		0.995498
336		80		20	0.995498
337			20	80	0.995498
339	20			80	0.995498
343			50	50	1.0
344	50	25		25	0.995533
345	25		75		0.996473
347		25	75		0.996473
349		75	25		0.996473
352	25	75			0.996473
354	75			25	0.996473
355	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain